MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:131.8 nTPM
GTEx:43.7 nTPM
FANTOM5:606.2 Scaled Tags Per Million
Pig:153.2 nTPM
Mouse:87.3 nTPM
Allen mouse:7.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 131.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.5
1827 Male, age 72, unknown 137.0
2666 Male, age 74, left hemisphere 131.1
2828 Female, age 72, unknown 131.0
2411 Female, age 72, unknown 127.9
1870 Female, age 42, unknown 120.6
1830 Male, age 51, unknown 117.6
1833 Male, age 53, unknown 115.3
2586 Male, age 75, left hemisphere 108.6
2019 Male, age 18, unknown 105.5
2219 Male, age 76, both hemispheres 90.2
Dorsal raphe nucleus
nTPM: 81.5
2750 Male, age 76, both hemispheres 145.5
1828 Male, age 53, unknown 79.8
2016 Female, age 72, unknown 74.4
2047 Male, age 72, unknown 56.3
2298 Female, age 72, unknown 51.3
Inferior colliculus
nTPM: 77.3
1890 Male, age 53, unknown 82.5
2849 Male, age 72, unknown 82.5
1848 Female, age 42, unknown 75.4
2097 Female, age 72, unknown 69.0
Median raphe nucleus
nTPM: 79.3
2220 Male, age 76, midline 79.3
Periaquaductal grey, anterior
nTPM: 115.8
1947 Male, age 18, unknown 133.7
1795 Male, age 51, unknown 127.7
2502 Female, age 75, unknown 86.2
Periaquaductal grey, dorsal
nTPM: 63.5
2464 Female, age 72, unknown 85.9
1831 Male, age 72, unknown 77.5
2850 Male, age 76, both hemispheres 47.5
1840 Male, age 53, unknown 43.1
Periaquaductal grey, lateral
nTPM: 78.3
2053 Male, age 18, unknown 100.2
2272 Male, age 74, both hemispheres 82.3
2140 Male, age 76, both hemispheres 52.4
Pretectal area
nTPM: 105.2
1815 Male, age 53, unknown 138.1
2007 Male, age 72, unknown 129.1
1816 Male, age 51, unknown 123.7
1817 Female, age 42, unknown 112.0
2316 Male, age 76, right hemisphere 109.0
2407 Male, age 75, both hemispheres 106.6
1944 Female, age 72, unknown 106.4
2825 Male, age 18, unknown 100.9
2667 Female, age 75, unknown 95.6
2224 Female, age 72, unknown 67.7
2273 Male, age 74, both hemispheres 67.6
Red nucleus
nTPM: 131.8
2823 Male, age 76, right hemisphere 163.3
2588 Male, age 74, left hemisphere 163.1
2503 Female, age 72, unknown 141.4
1904 Male, age 53, unknown 138.9
1865 Male, age 51, unknown 134.5
2725 Female, age 75, unknown 126.0
2227 Male, age 72, unknown 125.5
2584 Male, age 75, left hemisphere 124.8
2769 Male, age 72, unknown 122.8
1821 Female, age 72, unknown 117.9
2785 Male, age 18, unknown 117.6
1954 Female, age 42, unknown 106.3
Substantia nigra
nTPM: 86.7
2583 Male, age 75, right hemisphere 122.6
1889 Female, age 72, unknown 112.4
2590 Female, age 75, unknown 103.2
2409 Female, age 72, unknown 96.7
1851 Male, age 51, unknown 84.0
1941 Male, age 53, unknown 82.0
2665 Male, age 74, both hemispheres 76.0
1916 Female, age 42, unknown 66.1
2699 Male, age 18, unknown 63.7
2241 Male, age 72, unknown 59.9
Superior colliculus
nTPM: 112.9
1913 Female, age 42, unknown 146.8
2668 Female, age 75, unknown 133.6
1895 Male, age 76, right hemisphere 127.9
2261 Male, age 18, unknown 119.1
1995 Male, age 72, unknown 116.9
1796 Male, age 53, unknown 116.1
2587 Male, age 74, left hemisphere 103.8
2087 Female, age 72, unknown 100.6
1839 Male, age 51, unknown 89.8
2664 Male, age 75, both hemispheres 74.1
Ventral tegmental area
nTPM: 92.6
2410 Female, age 72, unknown 116.1
2223 Female, age 72, unknown 102.4
2218 Male, age 76, both hemispheres 97.0
1942 Male, age 51, unknown 81.8
2021 Male, age 53, unknown 80.4
1915 Female, age 42, unknown 77.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 183

Max nTPM: 302.6
Min nTPM: 8.5
Std nTPM: 30.4
Median nTPM: 35.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 302.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 130.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 125.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 120.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 118.0
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 107.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 106.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 95.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 94.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 91.4
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 91.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 606.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 606.2
FF:10158-103A5 76 years, female 606.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 153.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 139.7
Samples: 4

Max nTPM: 166.0
Min nTPM: 104.4
Sample A Female 143.6
Sample B Female 104.4
Sample C Male 144.6
Sample D Male 166.0
Midbrain
nTPM: 153.2
Samples: 4

Max nTPM: 183.3
Min nTPM: 122.1
Sample A Female 169.8
Sample B Female 122.1
Sample C Male 183.3
Sample D Male 137.4
Periaqueductal gray
nTPM: 108.8
Samples: 3

Max nTPM: 113.1
Min nTPM: 103.1
Sample B Female 110.1
Sample C Male 113.1
Sample D Male 103.1
Superior colliculi
nTPM: 139.5
Samples: 4

Max nTPM: 162.3
Min nTPM: 89.4
Sample A Female 147.6
Sample B Female 89.4
Sample C Male 158.7
Sample D Male 162.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 87.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 87.3
Samples: 4

Max nTPM: 89.5
Min nTPM: 85.2
Sample A Male 85.2
Sample B Male 86.6
Sample C Female 87.8
Sample D Female 89.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
71924364 Antisense, RP_050623_01_G04, Mouse strain C57BL/6J (56 days, male) 7.0
70528073 Antisense, RP_050623_01_G04, Mouse strain C57BL/6J (56 days, male) 4.7

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