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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

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  • BLOOD

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  • STRUCTURE

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  • SHTN1
BRAIN HYPOTHALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hypothalamus
Brain methods
HYPOTHALAMUS - Expression summary
Mouse brain, Intensity
Hypothalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

161.010
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:25.6 nTPM
HPA Brain:172.4 nTPM
GTEx:25.6 nTPM
Pig:79.0 nTPM
Mouse:17.0 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HYPOTHALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA037943
Hypothalamus mean intensity 161.010
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Dorsal tuberomammillary nucleus -
Mammillary nucleus 23.462
Periventricular hypothalamic nucleus 83.595
Supraoptic nucleus 21.664
Tuberal nucleus 14.938
Ventral tuberomammillary nucleus 18.234
Lateral preoptic area 75.711
Medial preoptic area 51.457
Suprachiasmatic nucleus 132.905
Paraventricular hypothalamic nucleus 161.010
Anterior hypothalamic area, central 101.004
Ventral medial hypothalamic nucleus 23.259
Ventral medial hypothalamic nucleus* -
Arcuate nucleus 19.463
Arcuate nucleus* -
Peduncular part of lateral hypothalmus 61.885
Dorsal medial hypothalamic nucleus 42.945
Stria terminalis* -

HYPOTHALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.4
Sample id Sample description nTPM
Arcuate nucleus
nTPM: 39.8
2226 Male, age 75, left hemisphere 44.0
1961 Female, age 42, unknown 35.5
Dorsomedial nucleus
nTPM: 70.8
2017 Female, age 42, unknown 94.3
1989 Male, age 62, unknown 73.6
2041 Female, age 72, unknown 44.4
Lateral hypothalamic area
nTPM: 82.4
2228 Male, age 66, unknown 101.2
2412 Male, age 62, unknown 89.6
2271 Male, age 75, both hemispheres 77.4
1791 Male, age 80, right hemisphere 61.4
Mammillary body
nTPM: 109.2
1945 Male, age 80, right hemisphere 130.7
1834 Female, age 42, unknown 125.3
1948 Female, age 72, unknown 124.9
2413 Male, age 66, unknown 89.1
1923 Female, age 72, unknown 75.8
Paraventricular nucleus
nTPM: 172.4
2700 Male, age 62, unknown 172.4
Preoptic area
nTPM: 94.8
2414 Female, age 72, unknown 141.4
1861 Female, age 42, unknown 96.6
1907 Male, age 80, right hemisphere 46.4
Supraoptic nucleus
nTPM: 89.2
2043 Male, age 62, unknown 96.4
2835 Female, age 72, unknown 93.4
1894 Female, age 72, unknown 77.9
Ventromedial nucleus
nTPM: 46.5
1982 Female, age 72, unknown 53.4
1822 Female, age 42, unknown 39.6

HYPOTHALAMUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.6
GTEx sample id Sample description nTPM
Brain - Hypothalamus
Average nTPM: 25.6
Samples: 257

Max nTPM: 197.2
Min nTPM: 3.2
Std nTPM: 25.9
Median nTPM: 17.0
GTEX-1JN6P-0011-R8a-SM-F6499 60-69 years, male 197.2
GTEX-11ZU8-0011-R8b-SM-GHWOM 60-69 years, male 160.3
GTEX-11EMC-0011-R8b-SM-DO91Z 60-69 years, female 158.2
GTEX-N7MS-0011-R8a-SM-2YUMK 60-69 years, male 138.0
GTEX-13PVQ-0011-R8a-SM-GJ3PT 50-59 years, male 118.6
GTEX-1GN1V-0011-R8a-SM-CKZNV 60-69 years, male 111.7
GTEX-X4XY-0011-R8A-SM-46MVC 60-69 years, male 104.0
GTEX-11H98-0011-R8a-SM-5NQ8V 50-59 years, male 93.3
GTEX-1H23P-0011-R8b-SM-A9G1G 60-69 years, male 91.3
GTEX-1CAMQ-0011-R8a-SM-ARU85 40-49 years, male 86.8
GTEX-1QEPI-0011-R8a-SM-G8LLI 60-69 years, female 86.8
GTEX-15DCD-0011-R8b-SM-7KUEF 70-79 years, female 73.7
GTEX-Y8DK-0011-R8B-SM-EYYVQ 60-69 years, male 71.1
GTEX-1QP6S-0011-R8a-SM-F649M 40-49 years, male 67.0
GTEX-1JJEA-0011-R8a-SM-F3419 60-69 years, male 66.6
GTEX-T6MN-0011-R8A-SM-32QP3 50-59 years, male 61.7
GTEX-13112-0011-R8b-SM-664OV 50-59 years, male 60.3
GTEX-1HBPI-0011-R8a-SM-A9G1S 50-59 years, male 57.2
GTEX-12126-0011-R8a-SM-GI4WV 20-29 years, male 54.5
GTEX-14753-0011-R8b-SM-5S2U1 60-69 years, male 53.2
GTEX-QDT8-0011-R8A-SM-G8W63 30-39 years, female 52.6
GTEX-1PPGY-0011-R8a-SM-F649R 60-69 years, male 52.5
GTEX-WL46-0011-R8B-SM-H7OHG 50-59 years, male 51.6
GTEX-1B8SG-0011-R8b-SM-7IGNW 50-59 years, male 50.4
GTEX-12WSD-0011-R8b-SM-9QEGI 60-69 years, female 50.0
GTEX-1POEN-0011-R8b-SM-F647O 30-39 years, female 49.7
GTEX-WWYW-0011-R8A-SM-3NB3S 50-59 years, female 49.4
GTEX-ZAB4-0011-R8b-SM-4SOKF 40-49 years, male 49.2
GTEX-YJ89-0011-R8b-SM-4SOK8 60-69 years, male 48.5
GTEX-11GSP-0011-R8b-SM-5NQ79 60-69 years, female 48.0
GTEX-1H3O1-0011-R8a-SM-CL555 60-69 years, male 46.9
GTEX-145LU-0011-R8b-SM-5PNZG 50-59 years, male 46.4
GTEX-11EI6-0011-R8a-SM-DO93M 60-69 years, male 44.6
GTEX-11ZUS-0011-R8a-SM-5BC73 30-39 years, male 44.3
GTEX-13X6J-0011-R8b-SM-5PNUA 50-59 years, male 44.1
GTEX-1RQED-0011-R8a-SM-G8LKO 60-69 years, male 42.9
GTEX-1C64N-0011-R8b-SM-7MGXE 50-59 years, male 42.2
GTEX-1HBPH-0011-R8b-SM-CL556 40-49 years, female 42.0
GTEX-1HT8W-0011-R8b-SM-CM2SX 30-39 years, male 41.9
GTEX-1CAV2-0011-R8a-SM-GRR24 40-49 years, female 41.4
GTEX-1R9K4-0011-R8b-SM-F649L 60-69 years, male 41.4
GTEX-S7SE-0011-R8A-SM-F649T 50-59 years, male 40.7
GTEX-1H1CY-0011-R8b-SM-CJI31 60-69 years, female 40.5
GTEX-1B8SF-0011-R8b-SM-7P8SX 60-69 years, male 40.2
GTEX-1JMPZ-0011-R8b-SM-F341A 30-39 years, male 40.1
GTEX-13SLX-0011-R8b-SM-5PNWZ 50-59 years, female 39.3
GTEX-1H1DG-0011-R8a-SM-CL54Z 70-79 years, male 38.7
GTEX-1F75A-0011-R8a-SM-CL539 50-59 years, male 38.1
GTEX-11TTK-0011-R8b-SM-DO111 60-69 years, female 38.0
GTEX-1ICLZ-0011-R8b-SM-ACKX4 60-69 years, male 37.8
GTEX-13OVJ-0011-R8b-SM-5L3FS 50-59 years, female 37.7
GTEX-16XZZ-0011-R8b-SM-7LT8S 60-69 years, male 36.8
GTEX-1CB4G-0011-R8b-SM-9WG7H 60-69 years, male 36.8
GTEX-RVPV-0011-R8A-SM-F21II 60-69 years, male 36.1
GTEX-ZZPT-0011-R8a-SM-GQ1CW 50-59 years, male 36.1
GTEX-13FLW-0011-R8b-SM-5J1MZ 50-59 years, male 35.3
GTEX-15G19-0011-R8b-SM-7KUL1 60-69 years, male 34.2
GTEX-1JMQK-0011-R8a-SM-G8LMS 60-69 years, male 34.0
GTEX-ZAK1-0011-R8a-SM-H7OGE 50-59 years, female 33.5
GTEX-WVLH-0011-R8A-SM-3MJFC 50-59 years, male 33.2
GTEX-14E7W-0011-R8b-SM-GQ1D6 70-79 years, male 32.3
GTEX-ZYY3-0011-R8a-SM-H7OHF 60-69 years, female 30.5
GTEX-14PN4-0011-R8a-SM-6EU1H 50-59 years, male 30.3
GTEX-1N5O9-0011-R8a-SM-F649C 60-69 years, male 30.3
GTEX-13JVG-0011-R8a-SM-5KM3E 60-69 years, male 29.6
GTEX-XMD1-0011-R8A-SM-4AT48 60-69 years, male 29.4
GTEX-1HCU6-0011-R8a-SM-CJI3R 60-69 years, female 29.0
GTEX-1P4AB-0011-R8a-SM-F341R 50-59 years, male 29.0
GTEX-YFC4-0011-R8a-SM-4SOK3 40-49 years, female 28.8
GTEX-131XW-0011-R8a-SM-5DUWY 50-59 years, female 28.7
GTEX-17F97-0011-R8a-SM-7DUET 50-59 years, male 28.5
GTEX-1NV5F-0011-R8b-SM-F647Z 60-69 years, female 28.4
GTEX-1F6I4-0011-R8a-SM-9QEIA 60-69 years, male 28.3
GTEX-13FLV-0011-R8a-SM-5LZZE 50-59 years, male 27.5
GTEX-13OVL-0011-R8a-SM-5L3HH 50-59 years, male 27.4
GTEX-145LS-0011-R8b-SM-5PNXA 60-69 years, female 27.2
GTEX-1IY9M-0011-R8a-SM-EYYWW 60-69 years, male 27.1
GTEX-13QJC-0011-R8b-SM-5S2U6 60-69 years, female 27.0
GTEX-1LSNL-0011-R8b-SM-F2TAH 50-59 years, male 26.9
GTEX-P44H-0011-R8A-SM-2XCEL 40-49 years, male 26.7
GTEX-132Q8-0011-R8b-SM-5DUWX 60-69 years, male 26.5
GTEX-13X6I-0011-R8a-SM-5PNZF 60-69 years, male 26.4
GTEX-1A8G6-0011-R8a-SM-7P8PD 60-69 years, male 26.3
GTEX-Z93S-0011-R8a-SM-4RGNL 50-59 years, male 26.3
GTEX-WHSE-0011-R8A-SM-3P5Z1 20-29 years, male 26.2
GTEX-1EMGI-0011-R8b-SM-9QEID 60-69 years, male 25.2
GTEX-RNOR-0011-R8A-SM-EZ6MN 50-59 years, female 25.2
GTEX-1GF9W-0011-R8b-SM-9QEIR 60-69 years, male 24.9
GTEX-QVJO-0011-R8A-SM-447C7 60-69 years, female 24.4
GTEX-11DYG-0011-R8a-SM-DO93F 60-69 years, male 24.0
GTEX-1KANB-0011-R8a-SM-F3K5N 50-59 years, male 24.0
GTEX-131XH-0011-R8a-SM-5EGLL 50-59 years, male 23.7
GTEX-ZVT3-0011-R8b-SM-57WDJ 60-69 years, female 23.7
GTEX-ZUA1-0011-R8b-SM-51MST 40-49 years, male 23.4
GTEX-17EVP-0011-R8b-SM-7DUF9 40-49 years, male 23.2
GTEX-1JN1M-0011-R8b-SM-F6485 60-69 years, female 23.1
GTEX-145MH-0011-R8a-SM-5PNUL 50-59 years, male 22.9
GTEX-1E2YA-0011-R8a-SM-CKZNG 50-59 years, male 22.9
GTEX-13NYS-0011-R8a-SM-5MR5H 60-69 years, male 22.2
GTEX-11ZTS-0011-R8a-SM-57WDI 60-69 years, female 22.1
GTEX-13OW8-0011-R8a-SM-5L3G5 60-69 years, male 21.9
GTEX-16Z82-0011-R8a-SM-7DUEX 60-69 years, male 21.7
GTEX-14JIY-0011-R8a-SM-6AJAP 60-69 years, male 21.6
GTEX-11WQK-0011-R8a-SM-5BC7C 50-59 years, male 21.5
GTEX-1KWVE-0011-R8a-SM-F3K4V 30-39 years, male 21.2
GTEX-1H1ZS-0011-R8b-SM-A9SKA 70-79 years, male 21.0
GTEX-1IDJH-0011-R8b-SM-ARZLL 70-79 years, male 20.9
GTEX-15DYW-0011-R8b-SM-GRR3B 60-69 years, female 20.6
GTEX-1GZ2Q-0011-R8a-SM-CE6RO 40-49 years, male 20.5
GTEX-139TS-0011-R8a-SM-5J1NP 60-69 years, male 20.3
GTEX-1IKOH-0011-R8a-SM-A9SKG 60-69 years, female 20.2
GTEX-1RDX4-0011-R8a-SM-G8LLT 50-59 years, female 20.1
GTEX-12WSA-0011-R8a-SM-5P9EX 60-69 years, male 19.8
GTEX-1313W-0011-R8a-SM-5DUVM 50-59 years, female 19.8
GTEX-1CB4H-0011-R8b-SM-CJI26 60-69 years, female 19.7
GTEX-ZAJG-0011-R8a-SM-H6Q6K 50-59 years, female 19.5
GTEX-1HGF4-0011-R8b-SM-CKZP9 60-69 years, male 19.4
GTEX-WZTO-0011-R8A-SM-4E3II 40-49 years, male 19.2
GTEX-ZF28-0011-R8a-SM-4WWFW 60-69 years, male 19.1
GTEX-11DXY-0011-R8a-SM-DO11M 60-69 years, male 18.7
GTEX-1GZ4I-0011-R8b-SM-9WG76 50-59 years, male 18.3
GTEX-1192X-0011-R8b-SM-DO11U 50-59 years, male 18.2
GTEX-11ONC-0011-R8b-SM-5NQ87 60-69 years, male 18.1
GTEX-15SHU-0011-R8a-SM-H6Q7V 40-49 years, female 18.0
GTEX-1F48J-0011-R8a-SM-9OSWW 50-59 years, female 17.6
GTEX-14LZ3-0011-R8b-SM-COH3M 60-69 years, female 17.4
GTEX-144GL-0011-R8a-SM-5Q5B1 50-59 years, male 17.1
GTEX-1JMQJ-0011-R8a-SM-G8LKT 50-59 years, male 17.0
GTEX-1LKK1-0011-R8a-SM-F341O 50-59 years, female 17.0
GTEX-1J1OQ-0011-R8a-SM-ACKVE 40-49 years, female 16.9
GTEX-1RAZS-0011-R8a-SM-F2TBI 50-59 years, male 16.9
GTEX-15RJE-0011-R8a-SM-H7OGM 40-49 years, male 16.3
GTEX-OXRN-0011-R8A-SM-E9TI1 50-59 years, male 16.3
GTEX-QMR6-0011-R8A-SM-32PKJ 50-59 years, male 16.2
GTEX-16GPK-0011-R8a-SM-79OMQ 60-69 years, male 16.0
GTEX-13NYB-0011-R8a-SM-5KM4R 40-49 years, male 15.9
GTEX-1N2EF-0011-R8a-SM-F6481 60-69 years, male 15.7
GTEX-NL4W-0011-R8a-SM-2I3G4 50-59 years, male 15.6
GTEX-1RQEC-0011-R8b-SM-F648X 60-69 years, male 15.5
GTEX-13OW6-0011-R8a-SM-5L3GF 50-59 years, male 15.3
GTEX-ZXG5-0011-R8a-SM-57WD1 60-69 years, male 15.2
GTEX-1A8G7-0011-R8a-SM-7P8S6 60-69 years, male 15.1
GTEX-16YQH-0011-R8a-SM-7DUFB 30-39 years, male 15.0
GTEX-1LSVX-0011-R8a-SM-F2TB3 60-69 years, male 14.8
GTEX-1MCQQ-0011-R8b-SM-F341H 60-69 years, male 14.6
GTEX-1OJC4-0011-R8a-SM-F3K5B 50-59 years, female 14.6
GTEX-14BMV-0011-R8a-SM-G9ERM 50-59 years, male 14.5
GTEX-14PJM-0011-R8b-SM-69LPD 50-59 years, female 14.5
GTEX-11GS4-0011-R8b-SM-GI4XA 60-69 years, male 14.4
GTEX-18465-0011-R8b-SM-7LG6O 50-59 years, male 14.4
GTEX-11WQC-0011-R8b-SM-57WCH 60-69 years, male 14.3
GTEX-1445S-0011-R8a-SM-5PNWX 60-69 years, male 14.3
GTEX-1I1GS-0011-R8b-SM-CKZPE 60-69 years, male 14.3
GTEX-1I1CD-0011-R8b-SM-CJI3X 60-69 years, female 14.2
GTEX-11NV4-0011-R8b-SM-GHWO4 60-69 years, male 14.1
GTEX-1477Z-0011-R8b-SM-5S2RG 60-69 years, male 14.0
GTEX-14BIL-0011-R8b-SM-69LQK 50-59 years, male 13.9
GTEX-13QIC-0011-R8b-SM-5O9CV 60-69 years, female 13.7
GTEX-1GZHY-0011-R8b-SM-9OSWK 50-59 years, female 13.5
GTEX-1I1HK-0011-R8b-SM-E8VN9 60-69 years, male 13.3
GTEX-147F4-0011-R8b-SM-5S2UN 50-59 years, male 13.1
GTEX-1J8Q2-0011-R8b-SM-D4P2E 60-69 years, male 13.1
GTEX-T5JC-0011-R8A-SM-32PLM 20-29 years, male 13.1
GTEX-12ZZX-0011-R8a-SM-5DUW8 40-49 years, female 12.9
GTEX-1HB9E-0011-R8b-SM-A9G1O 50-59 years, male 12.7
GTEX-14ASI-0011-R8b-SM-5S2UB 60-69 years, male 12.5
GTEX-1B996-0011-R8b-SM-79OOS 60-69 years, male 12.5
GTEX-1GMR8-0011-R8a-SM-CKZNX 50-59 years, female 12.5
GTEX-13O3O-0011-R8b-SM-5LUAL 60-69 years, female 12.4
GTEX-1LG7Y-0011-R8b-SM-F3K5C 50-59 years, male 12.3
GTEX-1MA7X-0011-R8a-SM-G9EQD 60-69 years, male 12.3
GTEX-1PWST-0011-R8a-SM-F3K5P 70-79 years, male 12.3
GTEX-PWO3-0011-R8A-SM-2I5GD 60-69 years, female 12.3
GTEX-13PDP-0011-R8b-SM-5O9CS 60-69 years, male 12.2
GTEX-1E1VI-0011-R8b-SM-ARU8E 50-59 years, male 12.2
GTEX-1GN73-0011-R8b-SM-CKZNY 60-69 years, male 12.1
GTEX-13G51-0011-R8b-SM-5LZZ4 60-69 years, male 12.0
GTEX-13OW7-0011-R8b-SM-5L3HR 50-59 years, male 12.0
GTEX-11OF3-0011-R8b-SM-57WCS 60-69 years, male 11.9
GTEX-14PJO-0011-R8a-SM-6AJAL 60-69 years, male 11.9
GTEX-1HFI6-0011-R8a-SM-ARZLP 40-49 years, male 11.9
GTEX-1N2DW-0011-R8a-SM-EY5YD 50-59 years, male 11.9
GTEX-11DXW-0011-R8a-SM-GIN8T 40-49 years, male 11.4
GTEX-12WSM-0011-R8a-SM-5DUWJ 60-69 years, male 11.2
GTEX-13VXU-0011-R8b-SM-GJ3RR 50-59 years, male 11.2
GTEX-117XS-0011-R8b-SM-GHWOD 60-69 years, male 11.1
GTEX-13CF2-0011-R8b-SM-5IJCX 60-69 years, male 11.1
GTEX-15ER7-0011-R8a-SM-7KUL2 20-29 years, female 11.1
GTEX-17EVQ-0011-R8a-SM-7189T 70-79 years, male 11.0
GTEX-X261-0011-R8A-SM-4E3I5 50-59 years, male 10.9
GTEX-14PQA-0011-R8b-SM-6AJAB 50-59 years, female 10.7
GTEX-1GN2E-0011-R8a-SM-CE6RK 60-69 years, male 10.6
GTEX-1LVA9-0011-R8a-SM-F3K5G 50-59 years, male 10.6
GTEX-14C5O-0011-R8a-SM-5YYAG 60-69 years, male 10.4
GTEX-1F75W-0011-R8a-SM-9QEI4 60-69 years, male 10.4
GTEX-1QMI2-0011-R8a-SM-F3429 60-69 years, male 10.4
GTEX-X4XX-0011-R8B-SM-46MWM 60-69 years, male 10.4
GTEX-1HSKV-0011-R8a-SM-CL54X 60-69 years, male 10.3
GTEX-ZDXO-0011-R8a-SM-4WWD7 60-69 years, male 10.1
GTEX-X585-0011-R8A-SM-46MUX 50-59 years, male 9.9
GTEX-1BAJH-0011-R8a-SM-7MXUB 70-79 years, male 9.8
GTEX-13O3Q-0011-R8b-SM-5KM2J 50-59 years, male 9.6
GTEX-1KD4Q-0011-R8a-SM-F341N 40-49 years, male 9.6
GTEX-13X6K-0011-R8b-SM-5PNZ4 60-69 years, female 9.5
GTEX-15EO6-0011-R8a-SM-H6Q6R 50-59 years, male 9.4
GTEX-1B933-0011-R8a-SM-9QEGX 50-59 years, female 9.4
GTEX-13NZA-0011-R8b-SM-5KM2Q 60-69 years, male 9.3
GTEX-ZVZQ-0011-R8a-SM-51MR5 60-69 years, female 9.3
GTEX-1B8L1-0011-R8b-SM-7P8ST 60-69 years, male 9.2
GTEX-11GSO-0011-R8b-SM-GJ3PM 60-69 years, male 9.1
GTEX-15CHQ-0011-R8b-SM-CNPO4 60-69 years, male 9.1
GTEX-1H3NZ-0011-R8a-SM-CKZP6 60-69 years, male 9.1
GTEX-13PLJ-0011-R8a-SM-GJ3QG 60-69 years, female 8.9
GTEX-16NPV-0011-R8a-SM-7EPH8 50-59 years, female 8.9
GTEX-111FC-0011-R8b-SM-GI4VS 60-69 years, male 8.7
GTEX-12696-0011-R8a-SM-GINAP 60-69 years, male 8.6
GTEX-1AX9I-0011-R8a-SM-7P8PJ 60-69 years, male 8.4
GTEX-11O72-0011-R8a-SM-GJ3R9 40-49 years, male 8.3
GTEX-13OW5-0011-R8a-SM-5L3GQ 60-69 years, male 8.3
GTEX-1GTWX-0011-R8a-SM-CE6RM 60-69 years, male 8.3
GTEX-17HII-0011-R8a-SM-79OK6 50-59 years, male 8.2
GTEX-1C6WA-0011-R8b-SM-7P8S7 60-69 years, male 8.2
GTEX-1RLM8-0011-R8a-SM-EYYXR 50-59 years, male 8.2
GTEX-14DAQ-0011-R8a-SM-G9ERP 60-69 years, female 8.1
GTEX-1IKK5-0011-R8b-SM-CJI45 60-69 years, male 8.0
GTEX-1MJK2-0011-R8a-SM-F341I 50-59 years, male 8.0
GTEX-13RTJ-0011-R8b-SM-5O9DL 60-69 years, male 7.9
GTEX-1R9PO-0011-R8a-SM-F2TA3 60-69 years, female 7.9
GTEX-1F6IF-0011-R8a-SM-9OSX5 60-69 years, male 7.8
GTEX-QVUS-0011-R8A-SM-3GAD7 60-69 years, female 7.8
GTEX-1HCVE-0011-R8a-SM-ARU7A 50-59 years, male 7.5
GTEX-1N2EE-0011-R8a-SM-F3K4X 60-69 years, male 7.3
GTEX-1CB4J-0011-R8a-SM-9QEHU 60-69 years, male 7.2
GTEX-1NV8Z-0011-R8b-SM-F3K3J 60-69 years, male 7.2
GTEX-13N1W-0011-R8a-SM-5MR56 70-79 years, male 7.1
GTEX-117YW-0011-R8a-SM-GINAB 50-59 years, male 6.9
GTEX-11DZ1-0011-R8b-SM-DNZZI 50-59 years, male 6.9
GTEX-17HG3-0011-R8a-SM-79OK7 30-39 years, female 6.6
GTEX-1C6VR-0011-R8b-SM-7MXUF 60-69 years, male 6.6
GTEX-13CIG-0011-R8b-SM-5LZX5 50-59 years, male 6.4
GTEX-1A3MX-0011-R8a-SM-7P8PI 60-69 years, male 6.3
GTEX-1GF9V-0011-R8b-SM-CE6RB 60-69 years, male 6.2
GTEX-1F52S-0011-R8a-SM-9OSXA 60-69 years, female 6.1
GTEX-1JMLX-0011-R8a-SM-G9EPQ 50-59 years, male 6.1
GTEX-1LVAO-0011-R8a-SM-F3K5J 60-69 years, male 5.9
GTEX-1399T-0011-R8b-SM-5IJD8 60-69 years, male 5.7
GTEX-1F88E-0011-R8a-SM-CJI2H 60-69 years, female 5.7
GTEX-NPJ8-0011-R8a-SM-2HMLG 40-49 years, male 5.6
GTEX-1GN1U-0011-R8a-SM-CL537 50-59 years, female 5.3
GTEX-1LH75-0011-R8b-SM-F2TB2 50-59 years, female 5.3
GTEX-13OVH-0011-R8b-SM-5MR35 70-79 years, male 4.9
GTEX-13FXS-0011-R8a-SM-5J1MN 50-59 years, male 4.8
GTEX-13SLW-0011-R8b-SM-5SI64 70-79 years, male 4.8
GTEX-1R46S-0011-R8a-SM-F3K4Q 60-69 years, female 4.5
GTEX-1I1GQ-0011-R8a-SM-C1YRS 50-59 years, male 4.3
GTEX-1O9I2-0011-R8a-SM-F2TAX 50-59 years, male 3.9
GTEX-1JMOU-0011-R8b-SM-F2TA9 60-69 years, female 3.2
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HYPOTHALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.0
Pig sample Sample description nTPM
Hypothalamus
nTPM: 79.0
Samples: 4

Max nTPM: 81.7
Min nTPM: 75.5
Sample A Female 78.5
Sample B Female 81.7
Sample C Male 80.2
Sample D Male 75.5

HYPOTHALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.0
Mouse sample Sample description nTPM
Hypothalamus
nTPM: 17.1
Samples: 4

Max nTPM: 17.5
Min nTPM: 16.6
Sample A Male 17.5
Sample B Male 16.7
Sample C Female 17.4
Sample D Female 16.6

HYPOTHALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.6
Allen experiment id Experiment description Expression energy
Hypothalamus
Expression energy: 3.6
322956 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 3.6
275675 Antisense, RP_040609_01_A09, Mouse strain C57BL/6J (56 days, male) 1.3

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