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  • ISG15
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:110.8 nTPM
HPA Brain:45.3 nTPM
GTEx:110.8 nTPM
FANTOM5:15.3 Scaled Tags Per Million
Pig:29.3 nTPM
Mouse:7.9 nTPM
Allen mouse:9.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.3
Sample id Sample description nTPM
Amygdala
nTPM: 37.1
2814 Male, age 76, right hemisphere 44.8
2695 Female, age 67, right hemisphere 42.6
2517 Female, age 94, left hemisphere 38.7
1987 Female, age 91, left hemisphere 33.1
2514 Male, age 75, right hemisphere 26.4
Basal amygdala
nTPM: 41.3
2110 Male, age 80, left hemisphere 67.1
2827 Female, age 67, right hemisphere 44.8
2243 Female, age 91, right hemisphere 41.4
1955 Male, age 76, both hemispheres 40.5
2685 Female, age 94, left hemisphere 27.2
2609 Male, age 75, right hemisphere 26.8
Central amygdala
nTPM: 45.3
2826 Female, age 94, left hemisphere 60.4
2239 Male, age 80, left hemisphere 60.3
1905 Male, age 76, both hemispheres 50.9
2515 Male, age 75, right hemisphere 30.1
2701 Female, age 91, right hemisphere 24.7
Corticomedial amygdala
nTPM: 30.8
2829 Male, age 80, left hemisphere 40.3
2242 Female, age 91, right hemisphere 38.2
2240 Male, age 76, both hemispheres 32.5
2429 Female, age 94, left hemisphere 26.4
2535 Female, age 67, right hemisphere 25.2
2428 Male, age 75, right hemisphere 21.9
Lateral amygdala
nTPM: 41.9
2534 Female, age 94, left hemisphere 61.3
2830 Female, age 67, right hemisphere 47.0
1883 Male, age 76, both hemispheres 43.2
2516 Male, age 75, right hemisphere 36.7
2256 Male, age 80, left hemisphere 35.3
2255 Female, age 91, right hemisphere 27.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 110.8
Samples: 181

Max nTPM: 1182.6
Min nTPM: 33.9
Std nTPM: 112.0
Median nTPM: 90.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1182.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 772.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 643.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 311.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 308.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 252.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 221.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 211.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 192.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 191.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 189.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 183.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 182.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 172.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 168.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 167.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 165.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 160.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 158.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 157.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 153.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 153.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 150.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 147.7
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 142.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 142.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 140.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 137.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 135.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 134.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 134.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 133.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 132.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 129.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 129.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 128.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 128.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 127.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 124.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 123.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 123.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 123.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 122.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 122.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 120.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 120.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 120.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 119.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 119.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 119.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 118.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 118.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 116.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 116.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 116.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 116.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 114.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 114.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 112.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 111.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 110.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 110.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 109.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 108.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 107.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 106.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 106.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 105.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 103.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 103.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 103.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 102.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 102.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 101.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 99.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 99.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 96.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 96.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 95.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 93.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 93.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 92.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 92.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 91.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 91.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 90.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 90.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 88.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 88.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 86.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 86.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 85.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 84.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 84.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 83.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 83.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 82.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 81.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 81.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 81.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 81.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 81.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 80.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 79.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 78.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 78.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 78.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 76.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 76.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 76.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 76.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 76.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 75.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 74.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 74.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 74.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 73.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 72.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 72.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 71.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 71.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 71.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 71.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 70.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 69.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 68.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 67.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 67.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 67.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 67.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 67.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 66.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 66.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 66.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 66.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 65.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 64.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 63.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 62.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 61.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 60.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 59.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 59.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 59.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 59.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 59.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 59.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 58.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 58.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 57.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 55.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 55.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 55.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 53.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 53.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 53.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 52.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 52.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 51.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 49.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 48.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 47.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 46.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 45.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 44.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 44.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 43.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 42.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 41.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 40.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 36.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 35.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 35.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 34.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 33.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

15.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 15.3
FF:10151-102I7 76 years, female 15.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.3
Pig sample Sample description nTPM
Amygdala
nTPM: 29.3
Samples: 4

Max nTPM: 38.6
Min nTPM: 22.9
Sample A Female 38.6
Sample B Female 22.9
Sample C Male 27.0
Sample D Male 28.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 7.9
Samples: 4

Max nTPM: 11.9
Min nTPM: 4.3
Sample A Male 5.6
Sample B Male 4.3
Sample C Female 9.9
Sample D Female 11.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

9.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 9.3
68563110 Antisense, RP_050125_01_B05, Mouse strain C57BL/6J (56 days, male) 9.3

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