MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:109.3 nTPM
HPA Brain:45.3 nTPM
GTEx:109.3 nTPM
FANTOM5:6.9 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:9.0 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.1
2666 Male, age 74, left hemisphere 52.8
2019 Male, age 18, unknown 40.4
1827 Male, age 72, unknown 37.3
2828 Female, age 72, unknown 33.8
2411 Female, age 72, unknown 23.3
1870 Female, age 42, unknown 22.4
1830 Male, age 51, unknown 21.4
1833 Male, age 53, unknown 19.3
2586 Male, age 75, left hemisphere 16.8
2219 Male, age 76, both hemispheres 13.5
Dorsal raphe nucleus
nTPM: 37.8
1828 Male, age 53, unknown 57.8
2750 Male, age 76, both hemispheres 43.4
2298 Female, age 72, unknown 37.3
2047 Male, age 72, unknown 26.1
2016 Female, age 72, unknown 24.2
Inferior colliculus
nTPM: 16.9
2097 Female, age 72, unknown 26.4
1848 Female, age 42, unknown 17.8
2849 Male, age 72, unknown 13.1
1890 Male, age 53, unknown 10.4
Median raphe nucleus
nTPM: 43.9
2220 Male, age 76, midline 43.9
Periaquaductal grey, anterior
nTPM: 45.0
2502 Female, age 75, unknown 56.5
1795 Male, age 51, unknown 52.7
1947 Male, age 18, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 24.2
1831 Male, age 72, unknown 30.7
2850 Male, age 76, both hemispheres 26.9
2464 Female, age 72, unknown 25.0
1840 Male, age 53, unknown 14.0
Periaquaductal grey, lateral
nTPM: 34.1
2272 Male, age 74, both hemispheres 47.2
2140 Male, age 76, both hemispheres 28.0
2053 Male, age 18, unknown 27.2
Pretectal area
nTPM: 45.3
1816 Male, age 51, unknown 84.2
1944 Female, age 72, unknown 72.5
1817 Female, age 42, unknown 68.5
2007 Male, age 72, unknown 62.6
1815 Male, age 53, unknown 53.4
2224 Female, age 72, unknown 35.6
2667 Female, age 75, unknown 33.3
2316 Male, age 76, right hemisphere 24.3
2273 Male, age 74, both hemispheres 24.2
2825 Male, age 18, unknown 24.1
2407 Male, age 75, both hemispheres 16.1
Red nucleus
nTPM: 23.1
2785 Male, age 18, unknown 45.5
2503 Female, age 72, unknown 29.4
2588 Male, age 74, left hemisphere 27.8
2823 Male, age 76, right hemisphere 23.6
2725 Female, age 75, unknown 21.2
2769 Male, age 72, unknown 20.6
1954 Female, age 42, unknown 20.4
2227 Male, age 72, unknown 19.8
1904 Male, age 53, unknown 18.1
1865 Male, age 51, unknown 17.7
1821 Female, age 72, unknown 16.9
2584 Male, age 75, left hemisphere 16.6
Substantia nigra
nTPM: 23.6
1889 Female, age 72, unknown 47.0
1941 Male, age 53, unknown 31.0
2665 Male, age 74, both hemispheres 29.9
2409 Female, age 72, unknown 24.7
2590 Female, age 75, unknown 22.2
2583 Male, age 75, right hemisphere 20.3
1851 Male, age 51, unknown 16.2
2241 Male, age 72, unknown 15.4
2699 Male, age 18, unknown 15.4
1916 Female, age 42, unknown 13.7
Superior colliculus
nTPM: 34.9
2087 Female, age 72, unknown 59.6
2261 Male, age 18, unknown 48.0
1796 Male, age 53, unknown 47.7
1913 Female, age 42, unknown 35.2
1995 Male, age 72, unknown 31.0
2587 Male, age 74, left hemisphere 30.7
2668 Female, age 75, unknown 30.5
1839 Male, age 51, unknown 26.2
1895 Male, age 76, right hemisphere 23.2
2664 Male, age 75, both hemispheres 16.6
Ventral tegmental area
nTPM: 21.7
2218 Male, age 76, both hemispheres 35.9
2410 Female, age 72, unknown 27.9
1942 Male, age 51, unknown 19.5
2021 Male, age 53, unknown 18.3
1915 Female, age 42, unknown 16.9
2223 Female, age 72, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 109.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 109.3
Samples: 183

Max nTPM: 6929.7
Min nTPM: 14.7
Std nTPM: 509.8
Median nTPM: 53.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 6929.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 499.3
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 458.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 422.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 348.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 277.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 205.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 195.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 191.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 164.2
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 155.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.9
FF:10158-103A5 76 years, female 6.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.0
Samples: 4

Max nTPM: 73.2
Min nTPM: 23.7
Sample A Female 73.2
Sample B Female 34.2
Sample C Male 45.0
Sample D Male 23.7
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 34.5
Min nTPM: 28.7
Sample A Female 31.8
Sample B Female 34.5
Sample C Male 28.7
Sample D Male 34.3
Periaqueductal gray
nTPM: 31.4
Samples: 3

Max nTPM: 33.2
Min nTPM: 28.3
Sample B Female 32.7
Sample C Male 33.2
Sample D Male 28.3
Superior colliculi
nTPM: 31.5
Samples: 4

Max nTPM: 39.8
Min nTPM: 24.1
Sample A Female 39.8
Sample B Female 24.1
Sample C Male 24.2
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.0
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.6
Sample A Male 10.9
Sample B Male 9.6
Sample C Female 9.0
Sample D Female 6.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
68563110 Antisense, RP_050125_01_B05, Mouse strain C57BL/6J (56 days, male) 4.6

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