MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA Brain:155.5 nTPM
GTEx:29.0 nTPM
FANTOM5:102.3 Scaled Tags Per Million
Mouse:27.3 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 155.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 114.8
2828 Female, age 72, unknown 145.8
1870 Female, age 42, unknown 124.3
1827 Male, age 72, unknown 122.8
2019 Male, age 18, unknown 119.7
2219 Male, age 76, both hemispheres 113.5
2666 Male, age 74, left hemisphere 112.2
2586 Male, age 75, left hemisphere 111.1
1830 Male, age 51, unknown 109.5
1833 Male, age 53, unknown 107.9
2411 Female, age 72, unknown 81.7
Dorsal raphe nucleus
nTPM: 129.0
2298 Female, age 72, unknown 160.0
2016 Female, age 72, unknown 131.1
1828 Male, age 53, unknown 123.7
2750 Male, age 76, both hemispheres 116.2
2047 Male, age 72, unknown 113.9
Inferior colliculus
nTPM: 145.3
2849 Male, age 72, unknown 156.1
2097 Female, age 72, unknown 144.7
1848 Female, age 42, unknown 143.7
1890 Male, age 53, unknown 136.5
Median raphe nucleus
nTPM: 94.7
2220 Male, age 76, midline 94.7
Periaquaductal grey, anterior
nTPM: 131.1
2502 Female, age 75, unknown 141.6
1947 Male, age 18, unknown 127.1
1795 Male, age 51, unknown 124.7
Periaquaductal grey, dorsal
nTPM: 135.2
1840 Male, age 53, unknown 168.0
1831 Male, age 72, unknown 135.3
2850 Male, age 76, both hemispheres 131.8
2464 Female, age 72, unknown 105.8
Periaquaductal grey, lateral
nTPM: 155.5
2272 Male, age 74, both hemispheres 183.1
2140 Male, age 76, both hemispheres 151.4
2053 Male, age 18, unknown 131.8
Pretectal area
nTPM: 135.5
2273 Male, age 74, both hemispheres 163.9
2667 Female, age 75, unknown 152.2
2224 Female, age 72, unknown 151.0
2316 Male, age 76, right hemisphere 139.2
2407 Male, age 75, both hemispheres 135.7
1944 Female, age 72, unknown 131.6
2825 Male, age 18, unknown 128.7
1817 Female, age 42, unknown 126.2
1815 Male, age 53, unknown 123.8
1816 Male, age 51, unknown 120.3
2007 Male, age 72, unknown 118.1
Red nucleus
nTPM: 125.5
2503 Female, age 72, unknown 152.2
1954 Female, age 42, unknown 141.9
1865 Male, age 51, unknown 141.0
1904 Male, age 53, unknown 138.9
2227 Male, age 72, unknown 138.0
2769 Male, age 72, unknown 131.6
1821 Female, age 72, unknown 129.5
2725 Female, age 75, unknown 127.9
2823 Male, age 76, right hemisphere 122.9
2785 Male, age 18, unknown 117.2
2588 Male, age 74, left hemisphere 83.2
2584 Male, age 75, left hemisphere 81.3
Substantia nigra
nTPM: 110.0
2699 Male, age 18, unknown 141.9
1916 Female, age 42, unknown 125.1
2665 Male, age 74, both hemispheres 124.5
1889 Female, age 72, unknown 119.3
1851 Male, age 51, unknown 111.4
2590 Female, age 75, unknown 103.6
2583 Male, age 75, right hemisphere 97.3
2409 Female, age 72, unknown 96.4
1941 Male, age 53, unknown 90.5
2241 Male, age 72, unknown 89.7
Superior colliculus
nTPM: 126.9
2664 Male, age 75, both hemispheres 145.0
1995 Male, age 72, unknown 139.8
1895 Male, age 76, right hemisphere 138.5
1796 Male, age 53, unknown 135.2
2087 Female, age 72, unknown 126.3
2587 Male, age 74, left hemisphere 122.6
1839 Male, age 51, unknown 122.3
2261 Male, age 18, unknown 122.2
1913 Female, age 42, unknown 112.3
2668 Female, age 75, unknown 104.8
Ventral tegmental area
nTPM: 104.8
1915 Female, age 42, unknown 126.5
1942 Male, age 51, unknown 112.4
2021 Male, age 53, unknown 104.0
2218 Male, age 76, both hemispheres 97.8
2223 Female, age 72, unknown 96.8
2410 Female, age 72, unknown 91.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 29.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.0
Samples: 183

Max nTPM: 158.8
Min nTPM: 4.8
Std nTPM: 21.4
Median nTPM: 23.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 158.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 156.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 93.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 91.8
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 83.0
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 78.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 78.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 68.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 65.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 65.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 63.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 102.3
FF:10158-103A5 76 years, female 102.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 27.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.3
Samples: 4

Max nTPM: 31.6
Min nTPM: 23.3
Sample A Male 27.7
Sample B Male 23.3
Sample C Female 26.6
Sample D Female 31.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69735030 Antisense, RP_050503_01_H09, Mouse strain C57BL/6J (56 days, male) 0.5

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