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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:64.7 nTPM
HPA Brain:37.6 nTPM
GTEx:64.7 nTPM
FANTOM5:115.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 29.9
1981 Female, age 72, midline 43.0
2048 Male, age 55, midline 30.3
2565 Male, age 75, midline 29.0
2816 Male, age 47, midline 24.3
2194 Female, age 79, both hemispheres 23.2
Cervical spinal cord, dorsal horn
nTPM: 34.2
2173 Female, age 72, unknown 47.7
2069 Male, age 47, both hemispheres 44.5
2296 Male, age 66, both hemispheres 39.3
1877 Male, age 55, unknown 36.5
2297 Male, age 75, both hemispheres 21.5
2721 Male, age 90, both hemispheres 15.9
Cervical spinal cord, ventral horn
nTPM: 37.6
2809 Male, age 90, both hemispheres 53.2
2098 Female, age 72, unknown 48.5
2480 Male, age 75, both hemispheres 47.1
2068 Male, age 55, unknown 32.1
2295 Male, age 66, both hemispheres 27.7
2820 Female, age 79, both hemispheres 17.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 64.7
Samples: 204

Max nTPM: 115.6
Min nTPM: 31.0
Std nTPM: 18.2
Median nTPM: 62.9
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 115.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 114.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 113.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 110.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 108.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 105.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 104.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 99.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 98.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 97.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 96.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 96.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 96.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 95.4
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 94.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 93.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 92.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 91.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 90.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 89.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 87.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 87.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 87.1
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 86.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 86.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 85.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 85.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 85.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 84.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 84.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 84.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 84.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 84.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 84.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 83.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 83.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 81.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 81.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 81.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 81.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 81.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 80.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 80.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 80.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 80.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 79.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 78.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 78.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 78.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 77.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 77.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 77.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 77.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 76.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 76.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 76.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 75.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 75.5
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 75.4
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 75.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 74.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 73.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 73.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 73.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 73.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 72.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 72.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 72.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 71.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 71.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 71.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 70.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 70.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 70.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 69.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 69.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 69.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 69.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 69.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 69.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 68.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 68.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 67.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 67.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 67.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 66.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 66.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 65.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 65.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 65.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 65.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 65.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 65.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 64.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 64.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 64.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 64.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 63.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 63.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 63.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 63.2
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 63.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 62.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 62.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 62.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 62.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 61.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 61.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 61.2
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 61.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 59.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 59.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 59.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 58.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 58.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 58.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 58.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 58.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 57.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 57.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 57.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 57.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 56.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 56.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 56.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 56.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 56.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 56.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 56.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 55.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 55.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 55.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 55.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 55.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 54.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 54.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 54.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 54.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 53.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 53.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 53.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 53.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 52.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 52.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 51.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 51.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 51.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 51.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 49.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 49.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 49.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 49.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 49.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 49.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 49.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 49.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 48.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 48.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 48.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 48.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 47.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 47.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 47.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 47.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 46.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 46.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 46.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 45.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 45.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 45.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 45.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 44.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 44.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 44.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 44.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 44.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 43.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 43.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 43.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 42.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 42.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 42.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 42.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 42.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 42.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 42.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 41.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 41.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 40.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 40.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 39.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 38.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 36.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 35.1
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 34.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 32.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 32.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 32.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 31.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 31.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

115.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 115.6
FF:10159-103A6 76 years, female 121.8
FF:10181-103D1 60 years, female 109.4

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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