HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:89.2 nTPM
HPA Brain:49.4 nTPM
GTEx:89.2 nTPM
FANTOM5:21.5 Scaled Tags Per Million
Pig:215.2 nTPM
Mouse:112.5 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA045841
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 49.4
Sample id Sample description nTPM
Hippocampus
nTPM: 49.4
2529 Female, age 94, left hemisphere 63.7
2148 Female, age 91, left hemisphere 49.5
1911 Female, age 85, right hemisphere 47.4
1898 Male, age 80, left hemisphere 45.9
1855 Male, age 76, left hemisphere 45.6
2621 Female, age 67, right hemisphere 44.1
Dentate gyrus
nTPM: 42.9
2528 Male, age 74, both hemispheres 54.8
2530 Female, age 94, left hemisphere 47.6
2010 Male, age 76, both hemispheres 45.9
2246 Female, age 85, both hemispheres 40.9
2531 Female, age 67, both hemispheres 37.8
1927 Female, age 91, both hemispheres 30.6
Entorhinal gyrus
nTPM: 45.6
2117 Female, age 91, right hemisphere 61.6
2686 Male, age 75, right hemisphere 53.4
1938 Female, age 85, left hemisphere 48.2
1787 Male, age 76, left hemisphere 42.1
2764 Male, age 80, right hemisphere 37.2
2613 Female, age 94, left hemisphere 31.4
Hippocampus, CA1
nTPM: 41.0
2527 Male, age 74, both hemispheres 54.8
1873 Female, age 85, both hemispheres 45.2
2082 Female, age 91, right hemisphere 38.0
2045 Male, age 76, both hemispheres 37.0
2749 Male, age 80, left hemisphere 29.8
Hippocampus, CA2
nTPM: 38.3
2249 Male, age 74, both hemispheres 45.4
1963 Male, age 80, left hemisphere 43.5
2113 Female, age 91, right hemisphere 41.8
2437 Female, age 94, left hemisphere 40.0
1940 Female, age 85, left hemisphere 33.1
1892 Male, age 76, both hemispheres 26.1
Hippocampus, CA3
nTPM: 42.8
2861 Female, age 67, both hemispheres 52.8
2436 Male, age 74, both hemispheres 43.4
1891 Female, age 85, both hemispheres 43.3
1867 Male, age 76, both hemispheres 41.8
2137 Male, age 80, left hemisphere 40.8
2620 Female, age 94, left hemisphere 34.7
Parahippocampal cortex
nTPM: 40.6
2692 Male, age 74, both hemispheres 53.7
2622 Female, age 67, right hemisphere 46.9
2018 Male, age 76, both hemispheres 46.8
2250 Female, age 67, right hemisphere 44.1
1933 Female, age 85, both hemispheres 42.4
1850 Male, age 80, both hemispheres 37.8
1990 Female, age 91, right hemisphere 35.7
2245 Female, age 91, both hemispheres 34.8
2532 Female, age 72, left hemisphere 34.1
2693 Female, age 94, both hemispheres 29.9
Perirhinal gyrus
nTPM: 31.5
1794 Male, age 80, right hemisphere 39.4
1847 Female, age 91, left hemisphere 35.4
1841 Female, age 85, right hemisphere 28.6
2521 Female, age 94, right hemisphere 27.3
2848 Male, age 76, right hemisphere 26.9
Subiculum
nTPM: 44.5
2619 Male, age 74, both hemispheres 60.4
2729 Female, age 91, right hemisphere 55.3
2042 Male, age 76, both hemispheres 44.4
1977 Female, age 85, both hemispheres 36.4
1901 Male, age 80, both hemispheres 36.3
2438 Female, age 94, left hemisphere 34.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 89.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 89.2
Samples: 255

Max nTPM: 324.5
Min nTPM: 31.0
Std nTPM: 42.5
Median nTPM: 79.9
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 324.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 286.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 260.7
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 242.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 220.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 201.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 198.1
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 188.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 187.5
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 187.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 175.5
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 21.5
FF:10153-102I9 76 years, female 27.5
FF:10169-103B7 60 years, female 15.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 215.2
Pig sample Sample description nTPM
Subiculum
nTPM: 198.5
Samples: 4

Max nTPM: 265.1
Min nTPM: 173.7
Sample A Female 265.1
Sample B Female 175.1
Sample C Male 180.1
Sample D Male 173.7
Dorsal hippocampus
nTPM: 183.6
Samples: 4

Max nTPM: 231.6
Min nTPM: 135.7
Sample A Female 231.6
Sample B Female 150.7
Sample C Male 216.5
Sample D Male 135.7
Entorhinal cortex
nTPM: 215.2
Samples: 4

Max nTPM: 252.9
Min nTPM: 174.2
Sample A Female 200.2
Sample B Female 233.5
Sample C Male 252.9
Sample D Male 174.2
Ventral hippocampus
nTPM: 194.3
Samples: 4

Max nTPM: 242.8
Min nTPM: 169.1
Sample A Female 192.6
Sample B Female 172.7
Sample C Male 242.8
Sample D Male 169.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 112.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 101.8
Samples: 4

Max nTPM: 119.1
Min nTPM: 90.6
Sample A Male 119.1
Sample B Male 98.5
Sample C Female 98.8
Sample D Female 90.6
Hippocampal formation
nTPM: 112.5
Samples: 4

Max nTPM: 125.9
Min nTPM: 103.6
Sample A Male 125.9
Sample B Male 103.6
Sample C Female 111.5
Sample D Female 108.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
68341752 Antisense, RP_041207_02_B04, Mouse strain C57BL/6J (56 days, male) 2.3
77371787 Antisense, RP_070116_01_C03, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo