MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.8 nTPM
HPA Brain:54.1 nTPM
GTEx:53.8 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:32.7 nTPM
Mouse:22.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.1
2586 Male, age 75, left hemisphere 60.7
2019 Male, age 18, unknown 55.0
1827 Male, age 72, unknown 54.1
2828 Female, age 72, unknown 49.0
2219 Male, age 76, both hemispheres 42.7
2666 Male, age 74, left hemisphere 42.3
2411 Female, age 72, unknown 37.6
1833 Male, age 53, unknown 34.2
1830 Male, age 51, unknown 32.8
1870 Female, age 42, unknown 32.6
Dorsal raphe nucleus
nTPM: 33.0
2298 Female, age 72, unknown 37.6
2750 Male, age 76, both hemispheres 37.0
1828 Male, age 53, unknown 32.0
2047 Male, age 72, unknown 30.1
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 37.7
2097 Female, age 72, unknown 44.1
1890 Male, age 53, unknown 42.3
1848 Female, age 42, unknown 33.8
2849 Male, age 72, unknown 30.5
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Periaquaductal grey, anterior
nTPM: 42.3
1795 Male, age 51, unknown 47.2
1947 Male, age 18, unknown 39.8
2502 Female, age 75, unknown 39.8
Periaquaductal grey, dorsal
nTPM: 34.8
1831 Male, age 72, unknown 45.6
1840 Male, age 53, unknown 33.5
2464 Female, age 72, unknown 32.8
2850 Male, age 76, both hemispheres 27.3
Periaquaductal grey, lateral
nTPM: 30.7
2053 Male, age 18, unknown 35.4
2272 Male, age 74, both hemispheres 30.2
2140 Male, age 76, both hemispheres 26.5
Pretectal area
nTPM: 54.1
1816 Male, age 51, unknown 81.8
1944 Female, age 72, unknown 74.8
1817 Female, age 42, unknown 71.7
2007 Male, age 72, unknown 71.4
1815 Male, age 53, unknown 69.7
2667 Female, age 75, unknown 51.6
2407 Male, age 75, both hemispheres 42.5
2224 Female, age 72, unknown 34.0
2825 Male, age 18, unknown 32.6
2273 Male, age 74, both hemispheres 32.5
2316 Male, age 76, right hemisphere 32.4
Red nucleus
nTPM: 39.5
2584 Male, age 75, left hemisphere 49.6
2785 Male, age 18, unknown 48.9
1821 Female, age 72, unknown 43.3
2725 Female, age 75, unknown 41.6
2588 Male, age 74, left hemisphere 41.5
2503 Female, age 72, unknown 39.6
1904 Male, age 53, unknown 38.5
2823 Male, age 76, right hemisphere 37.6
1865 Male, age 51, unknown 37.2
1954 Female, age 42, unknown 35.7
2769 Male, age 72, unknown 30.7
2227 Male, age 72, unknown 29.6
Substantia nigra
nTPM: 51.5
1916 Female, age 42, unknown 60.4
1889 Female, age 72, unknown 60.2
1851 Male, age 51, unknown 58.4
2583 Male, age 75, right hemisphere 53.2
2665 Male, age 74, both hemispheres 53.0
2241 Male, age 72, unknown 50.8
1941 Male, age 53, unknown 49.9
2409 Female, age 72, unknown 47.8
2590 Female, age 75, unknown 42.5
2699 Male, age 18, unknown 38.1
Superior colliculus
nTPM: 48.4
2087 Female, age 72, unknown 65.3
2261 Male, age 18, unknown 56.3
2668 Female, age 75, unknown 55.6
1796 Male, age 53, unknown 51.4
2664 Male, age 75, both hemispheres 49.7
1913 Female, age 42, unknown 48.1
1995 Male, age 72, unknown 45.0
1895 Male, age 76, right hemisphere 41.2
2587 Male, age 74, left hemisphere 36.5
1839 Male, age 51, unknown 34.6
Ventral tegmental area
nTPM: 44.2
2410 Female, age 72, unknown 53.8
2218 Male, age 76, both hemispheres 51.7
1915 Female, age 42, unknown 47.4
1942 Male, age 51, unknown 39.7
2223 Female, age 72, unknown 37.3
2021 Male, age 53, unknown 35.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 53.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.8
Samples: 183

Max nTPM: 131.3
Min nTPM: 16.5
Std nTPM: 19.2
Median nTPM: 50.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 131.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 114.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 107.9
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 106.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 105.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 104.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 100.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 99.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 96.1
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 94.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 88.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 26.4
Min nTPM: 22.7
Sample A Female 26.4
Sample B Female 24.2
Sample C Male 22.7
Sample D Male 24.9
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 39.7
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 26.2
Sample C Male 33.7
Sample D Male 39.7
Periaqueductal gray
nTPM: 23.2
Samples: 3

Max nTPM: 24.3
Min nTPM: 21.9
Sample B Female 24.3
Sample C Male 23.4
Sample D Male 21.9
Superior colliculi
nTPM: 32.7
Samples: 4

Max nTPM: 36.1
Min nTPM: 30.7
Sample A Female 36.1
Sample B Female 30.7
Sample C Male 31.8
Sample D Male 32.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 23.7
Min nTPM: 20.1
Sample A Male 23.7
Sample B Male 22.0
Sample C Female 20.1
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70194600 Antisense, RP_050517_01_G01, Mouse strain C57BL/6J (56 days, male) 0.1

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