MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.9 nTPM
HPA Brain:28.4 nTPM
GTEx:19.9 nTPM
FANTOM5:27.1 Scaled Tags Per Million
Pig:19.6 nTPM
Mouse:30.2 nTPM
Allen mouse:3.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.0
1827 Male, age 72, unknown 28.5
2666 Male, age 74, left hemisphere 28.5
2019 Male, age 18, unknown 28.0
2586 Male, age 75, left hemisphere 27.5
2411 Female, age 72, unknown 27.4
2219 Male, age 76, both hemispheres 27.1
2828 Female, age 72, unknown 24.3
1833 Male, age 53, unknown 23.7
1870 Female, age 42, unknown 22.9
1830 Male, age 51, unknown 22.0
Dorsal raphe nucleus
nTPM: 24.9
2750 Male, age 76, both hemispheres 27.9
2298 Female, age 72, unknown 27.2
2047 Male, age 72, unknown 25.1
1828 Male, age 53, unknown 24.5
2016 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 22.9
2097 Female, age 72, unknown 25.3
1890 Male, age 53, unknown 22.6
1848 Female, age 42, unknown 22.3
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 28.4
1795 Male, age 51, unknown 29.1
2502 Female, age 75, unknown 28.7
1947 Male, age 18, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 21.6
2464 Female, age 72, unknown 22.5
1840 Male, age 53, unknown 22.4
1831 Male, age 72, unknown 21.8
2850 Male, age 76, both hemispheres 19.6
Periaquaductal grey, lateral
nTPM: 21.5
2272 Male, age 74, both hemispheres 23.9
2053 Male, age 18, unknown 21.9
2140 Male, age 76, both hemispheres 18.7
Pretectal area
nTPM: 27.6
1816 Male, age 51, unknown 34.6
2007 Male, age 72, unknown 34.2
1944 Female, age 72, unknown 31.9
1817 Female, age 42, unknown 31.5
1815 Male, age 53, unknown 29.3
2667 Female, age 75, unknown 27.5
2407 Male, age 75, both hemispheres 24.4
2224 Female, age 72, unknown 23.8
2316 Male, age 76, right hemisphere 22.5
2825 Male, age 18, unknown 22.2
2273 Male, age 74, both hemispheres 21.7
Red nucleus
nTPM: 24.3
2785 Male, age 18, unknown 27.4
2584 Male, age 75, left hemisphere 26.0
1821 Female, age 72, unknown 25.8
2725 Female, age 75, unknown 25.8
2588 Male, age 74, left hemisphere 24.9
2769 Male, age 72, unknown 24.0
2503 Female, age 72, unknown 23.7
2227 Male, age 72, unknown 23.0
1904 Male, age 53, unknown 22.9
1865 Male, age 51, unknown 22.8
1954 Female, age 42, unknown 22.8
2823 Male, age 76, right hemisphere 21.8
Substantia nigra
nTPM: 27.5
1916 Female, age 42, unknown 36.3
1941 Male, age 53, unknown 30.4
1851 Male, age 51, unknown 30.3
1889 Female, age 72, unknown 29.7
2409 Female, age 72, unknown 27.2
2665 Male, age 74, both hemispheres 26.4
2241 Male, age 72, unknown 24.9
2583 Male, age 75, right hemisphere 24.1
2699 Male, age 18, unknown 23.6
2590 Female, age 75, unknown 22.3
Superior colliculus
nTPM: 25.1
2087 Female, age 72, unknown 29.5
2261 Male, age 18, unknown 29.1
1796 Male, age 53, unknown 28.3
2668 Female, age 75, unknown 28.0
1895 Male, age 76, right hemisphere 24.6
1839 Male, age 51, unknown 23.7
2587 Male, age 74, left hemisphere 23.2
1913 Female, age 42, unknown 23.1
1995 Male, age 72, unknown 21.7
2664 Male, age 75, both hemispheres 20.3
Ventral tegmental area
nTPM: 25.5
2410 Female, age 72, unknown 29.4
2218 Male, age 76, both hemispheres 29.3
1915 Female, age 42, unknown 27.7
1942 Male, age 51, unknown 22.9
2223 Female, age 72, unknown 22.7
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 19.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.9
Samples: 183

Max nTPM: 40.0
Min nTPM: 10.1
Std nTPM: 5.3
Median nTPM: 18.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 40.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 35.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 32.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 32.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 29.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 29.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 28.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.1
FF:10158-103A5 76 years, female 27.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.3
Samples: 4

Max nTPM: 21.1
Min nTPM: 15.0
Sample A Female 21.1
Sample B Female 16.2
Sample C Male 20.7
Sample D Male 15.0
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 22.0
Min nTPM: 16.8
Sample A Female 17.6
Sample B Female 16.8
Sample C Male 22.0
Sample D Male 17.6
Periaqueductal gray
nTPM: 16.3
Samples: 3

Max nTPM: 18.1
Min nTPM: 14.2
Sample B Female 16.6
Sample C Male 18.1
Sample D Male 14.2
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 22.1
Min nTPM: 17.3
Sample A Female 20.3
Sample B Female 17.3
Sample C Male 22.1
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.2
Samples: 4

Max nTPM: 31.4
Min nTPM: 28.7
Sample A Male 28.7
Sample B Male 29.8
Sample C Female 31.4
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
583872 Antisense, RP_040831_01_C12, Mouse strain C57BL/6J (56 days, male) 3.0

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