MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.3 nTPM
HPA Brain:70.0 nTPM
GTEx:66.3 nTPM
FANTOM5:62.9 Scaled Tags Per Million
Pig:86.0 nTPM
Mouse:103.2 nTPM
Allen mouse:8.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 70.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.9
2666 Male, age 74, left hemisphere 93.0
1827 Male, age 72, unknown 77.2
2828 Female, age 72, unknown 74.5
2586 Male, age 75, left hemisphere 73.4
2019 Male, age 18, unknown 63.7
1870 Female, age 42, unknown 63.6
1830 Male, age 51, unknown 58.0
1833 Male, age 53, unknown 53.4
2411 Female, age 72, unknown 49.2
2219 Male, age 76, both hemispheres 43.6
Dorsal raphe nucleus
nTPM: 56.7
2750 Male, age 76, both hemispheres 58.0
2047 Male, age 72, unknown 57.7
1828 Male, age 53, unknown 57.5
2298 Female, age 72, unknown 55.7
2016 Female, age 72, unknown 54.7
Inferior colliculus
nTPM: 70.0
2849 Male, age 72, unknown 79.3
1848 Female, age 42, unknown 71.4
2097 Female, age 72, unknown 66.7
1890 Male, age 53, unknown 62.7
Median raphe nucleus
nTPM: 57.9
2220 Male, age 76, midline 57.9
Periaquaductal grey, anterior
nTPM: 64.1
1795 Male, age 51, unknown 65.6
1947 Male, age 18, unknown 63.3
2502 Female, age 75, unknown 63.3
Periaquaductal grey, dorsal
nTPM: 65.0
2850 Male, age 76, both hemispheres 85.9
1831 Male, age 72, unknown 65.5
1840 Male, age 53, unknown 58.0
2464 Female, age 72, unknown 50.5
Periaquaductal grey, lateral
nTPM: 64.8
2140 Male, age 76, both hemispheres 77.8
2053 Male, age 18, unknown 64.3
2272 Male, age 74, both hemispheres 52.4
Pretectal area
nTPM: 69.7
1817 Female, age 42, unknown 85.3
2007 Male, age 72, unknown 80.6
1816 Male, age 51, unknown 77.0
1815 Male, age 53, unknown 75.0
2407 Male, age 75, both hemispheres 71.9
2316 Male, age 76, right hemisphere 71.3
2825 Male, age 18, unknown 67.7
1944 Female, age 72, unknown 66.4
2667 Female, age 75, unknown 60.2
2224 Female, age 72, unknown 59.4
2273 Male, age 74, both hemispheres 52.0
Red nucleus
nTPM: 66.6
2725 Female, age 75, unknown 78.0
2503 Female, age 72, unknown 77.5
2588 Male, age 74, left hemisphere 70.4
2584 Male, age 75, left hemisphere 68.5
1821 Female, age 72, unknown 67.7
2823 Male, age 76, right hemisphere 66.2
1865 Male, age 51, unknown 65.9
2785 Male, age 18, unknown 65.9
1954 Female, age 42, unknown 61.0
2227 Male, age 72, unknown 61.0
2769 Male, age 72, unknown 59.8
1904 Male, age 53, unknown 57.3
Substantia nigra
nTPM: 55.5
1941 Male, age 53, unknown 74.9
2665 Male, age 74, both hemispheres 70.1
1889 Female, age 72, unknown 62.8
2583 Male, age 75, right hemisphere 60.0
2699 Male, age 18, unknown 59.6
2590 Female, age 75, unknown 51.4
1851 Male, age 51, unknown 49.0
1916 Female, age 42, unknown 44.4
2409 Female, age 72, unknown 42.8
2241 Male, age 72, unknown 39.7
Superior colliculus
nTPM: 68.2
2664 Male, age 75, both hemispheres 78.5
1796 Male, age 53, unknown 72.6
1839 Male, age 51, unknown 72.4
2668 Female, age 75, unknown 70.8
1995 Male, age 72, unknown 66.4
1895 Male, age 76, right hemisphere 66.2
2587 Male, age 74, left hemisphere 65.3
1913 Female, age 42, unknown 63.9
2261 Male, age 18, unknown 63.9
2087 Female, age 72, unknown 62.2
Ventral tegmental area
nTPM: 52.9
2223 Female, age 72, unknown 55.4
2021 Male, age 53, unknown 54.9
2218 Male, age 76, both hemispheres 54.3
1942 Male, age 51, unknown 53.2
1915 Female, age 42, unknown 50.9
2410 Female, age 72, unknown 48.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.3
Samples: 183

Max nTPM: 333.1
Min nTPM: 22.9
Std nTPM: 28.6
Median nTPM: 63.0
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 333.1
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 192.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 120.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 117.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 116.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 116.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 110.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 107.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 104.2
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 103.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 100.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 62.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.9
FF:10158-103A5 76 years, female 62.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.5
Samples: 4

Max nTPM: 65.0
Min nTPM: 45.8
Sample A Female 65.0
Sample B Female 64.2
Sample C Male 55.1
Sample D Male 45.8
Midbrain
nTPM: 82.2
Samples: 4

Max nTPM: 90.7
Min nTPM: 62.3
Sample A Female 85.5
Sample B Female 62.3
Sample C Male 90.3
Sample D Male 90.7
Periaqueductal gray
nTPM: 69.4
Samples: 3

Max nTPM: 74.9
Min nTPM: 66.4
Sample B Female 66.9
Sample C Male 74.9
Sample D Male 66.4
Superior colliculi
nTPM: 86.0
Samples: 4

Max nTPM: 94.9
Min nTPM: 77.6
Sample A Female 94.9
Sample B Female 88.1
Sample C Male 83.4
Sample D Male 77.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 103.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.2
Samples: 4

Max nTPM: 106.0
Min nTPM: 101.1
Sample A Male 106.0
Sample B Male 101.1
Sample C Female 102.0
Sample D Female 103.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
70431343 Antisense, RP_050614_02_F06, Mouse strain C57BL/6J (56 days, male) 8.9

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