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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:111.9 nTPM
HPA Brain:127.9 nTPM
GTEx:111.9 nTPM
FANTOM5:296.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 105.7
1981 Female, age 72, midline 126.8
2816 Male, age 47, midline 109.5
2048 Male, age 55, midline 107.0
2194 Female, age 79, both hemispheres 105.0
2565 Male, age 75, midline 80.3
Cervical spinal cord, dorsal horn
nTPM: 114.0
2173 Female, age 72, unknown 162.7
2296 Male, age 66, both hemispheres 144.3
2069 Male, age 47, both hemispheres 108.6
1877 Male, age 55, unknown 103.6
2721 Male, age 90, both hemispheres 94.7
2297 Male, age 75, both hemispheres 70.3
Cervical spinal cord, ventral horn
nTPM: 127.9
2098 Female, age 72, unknown 168.4
2809 Male, age 90, both hemispheres 150.8
2068 Male, age 55, unknown 130.8
2820 Female, age 79, both hemispheres 114.0
2295 Male, age 66, both hemispheres 102.1
2480 Male, age 75, both hemispheres 101.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 111.9
Samples: 204

Max nTPM: 253.0
Min nTPM: 43.2
Std nTPM: 29.6
Median nTPM: 112.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 253.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 187.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 182.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 176.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 173.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 169.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 168.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 162.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 161.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 160.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 159.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 154.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 154.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 153.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 152.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 151.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 150.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 148.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 148.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 148.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 148.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 148.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 146.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 144.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 142.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 141.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 140.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 140.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 139.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 139.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 139.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 139.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 139.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 138.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 138.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 138.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 137.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 137.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 136.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 136.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 136.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 135.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 135.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 135.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 134.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 134.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 133.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 132.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 132.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 131.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 131.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 130.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 130.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 129.3
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 128.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 128.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 127.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 126.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 126.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 125.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 125.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 125.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 125.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 124.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 124.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 123.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 123.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 123.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 123.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 122.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 122.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 122.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 121.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 121.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 121.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 121.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 121.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 121.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 121.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 120.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 120.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 119.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 119.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 118.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 118.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 117.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 116.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 116.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 116.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 115.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 115.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 115.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 115.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 114.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 114.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 113.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 113.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 113.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 113.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 113.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 113.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 113.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 112.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 112.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 111.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 110.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 109.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 109.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 108.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 108.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 108.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 108.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 108.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 107.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 107.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 106.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 106.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 106.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 106.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 106.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 105.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 105.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 105.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 105.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 104.5
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 103.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 103.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 103.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 103.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 102.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 101.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 101.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 101.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 100.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 100.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 99.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 99.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 98.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 98.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 97.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 97.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 97.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 96.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 96.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 96.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 96.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 95.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 95.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 95.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 95.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 95.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 94.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 93.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 93.9
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 93.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 93.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 90.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 89.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 89.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 89.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 89.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 88.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 87.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 85.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 85.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 85.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 82.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 81.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 81.7
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 81.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 80.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 79.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 79.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 78.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 78.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 78.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 78.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 77.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 75.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 74.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 74.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 74.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 73.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 72.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 72.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 71.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 68.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 67.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 65.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 64.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 62.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 61.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 61.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 61.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 61.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 59.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 57.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 57.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 53.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 53.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 47.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

296.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 296.8
FF:10181-103D1 60 years, female 435.2
FF:10159-103A6 76 years, female 158.5

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The Human Protein Atlas

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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