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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
36.6
nTPM
HPA Brain:
47.1
nTPM
GTEx:
36.6
nTPM
FANTOM5:
18.1
Scaled Tags Per Million
Pig:
68.2
nTPM
Mouse:
54.5
nTPM
Allen mouse:
2.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
47.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 26.6
2219
Male, age 76, both hemispheres
43.8
1827
Male, age 72, unknown
32.5
2828
Female, age 72, unknown
28.7
2666
Male, age 74, left hemisphere
28.4
2411
Female, age 72, unknown
28.1
1870
Female, age 42, unknown
25.6
2586
Male, age 75, left hemisphere
22.2
1833
Male, age 53, unknown
21.6
1830
Male, age 51, unknown
19.8
2019
Male, age 18, unknown
15.4
Dorsal raphe nucleus nTPM: 34.7
2298
Female, age 72, unknown
46.9
2047
Male, age 72, unknown
43.7
2750
Male, age 76, both hemispheres
34.8
1828
Male, age 53, unknown
29.7
2016
Female, age 72, unknown
18.5
Inferior colliculus nTPM: 22.5
1848
Female, age 42, unknown
26.0
2097
Female, age 72, unknown
23.5
2849
Male, age 72, unknown
23.4
1890
Male, age 53, unknown
17.3
Median raphe nucleus nTPM: 47.1
2220
Male, age 76, midline
47.1
Periaquaductal grey, anterior nTPM: 30.9
1795
Male, age 51, unknown
35.9
1947
Male, age 18, unknown
31.1
2502
Female, age 75, unknown
25.8
Periaquaductal grey, dorsal nTPM: 26.8
1840
Male, age 53, unknown
33.9
2850
Male, age 76, both hemispheres
27.1
1831
Male, age 72, unknown
23.1
2464
Female, age 72, unknown
22.9
Periaquaductal grey, lateral nTPM: 26.0
2053
Male, age 18, unknown
27.1
2272
Male, age 74, both hemispheres
26.1
2140
Male, age 76, both hemispheres
24.9
Pretectal area nTPM: 26.1
2224
Female, age 72, unknown
39.8
1816
Male, age 51, unknown
31.6
1944
Female, age 72, unknown
31.1
2825
Male, age 18, unknown
28.7
1817
Female, age 42, unknown
26.9
2007
Male, age 72, unknown
26.1
1815
Male, age 53, unknown
24.8
2667
Female, age 75, unknown
23.7
2273
Male, age 74, both hemispheres
19.7
2407
Male, age 75, both hemispheres
19.2
2316
Male, age 76, right hemisphere
15.3
Red nucleus nTPM: 15.0
2725
Female, age 75, unknown
25.2
2584
Male, age 75, left hemisphere
19.7
2823
Male, age 76, right hemisphere
15.9
2785
Male, age 18, unknown
15.1
2227
Male, age 72, unknown
14.0
1954
Female, age 42, unknown
13.6
2769
Male, age 72, unknown
13.5
1821
Female, age 72, unknown
13.3
2588
Male, age 74, left hemisphere
13.0
2503
Female, age 72, unknown
12.7
1865
Male, age 51, unknown
12.3
1904
Male, age 53, unknown
12.0
Substantia nigra nTPM: 34.1
1916
Female, age 42, unknown
57.7
1851
Male, age 51, unknown
40.3
2241
Male, age 72, unknown
38.0
1941
Male, age 53, unknown
36.8
2665
Male, age 74, both hemispheres
31.6
2699
Male, age 18, unknown
31.1
2409
Female, age 72, unknown
30.8
1889
Female, age 72, unknown
30.0
2590
Female, age 75, unknown
25.8
2583
Male, age 75, right hemisphere
18.5
Superior colliculus nTPM: 23.1
1796
Male, age 53, unknown
34.2
2261
Male, age 18, unknown
31.7
2087
Female, age 72, unknown
26.3
1895
Male, age 76, right hemisphere
23.4
1839
Male, age 51, unknown
23.1
2587
Male, age 74, left hemisphere
21.4
2668
Female, age 75, unknown
21.1
2664
Male, age 75, both hemispheres
19.1
1913
Female, age 42, unknown
16.9
1995
Male, age 72, unknown
13.6
Ventral tegmental area nTPM: 32.7
1915
Female, age 42, unknown
39.3
2218
Male, age 76, both hemispheres
34.4
2223
Female, age 72, unknown
32.9
2410
Female, age 72, unknown
31.9
2021
Male, age 53, unknown
30.9
1942
Male, age 51, unknown
26.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
36.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 36.6
Samples: 139
Max nTPM: 97.8
Min nTPM: 9.0
Std nTPM: 18.9
Median nTPM: 31.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
97.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
96.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
89.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
86.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
86.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
84.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
83.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
71.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
70.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
70.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
69.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
68.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
68.1
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
63.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
62.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
61.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
60.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
58.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
58.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
55.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
53.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
53.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
53.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
53.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
52.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
52.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
49.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
48.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
48.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
47.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
47.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
47.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
46.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
46.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
46.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
45.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
44.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
44.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
44.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
43.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
42.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
42.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
42.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
42.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
41.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
41.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
41.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
41.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
39.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
39.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
39.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
39.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
36.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
36.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
36.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
36.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
36.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
36.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
36.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
36.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
35.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
34.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
34.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
34.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
33.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
33.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
32.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
32.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
32.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
31.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
31.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
31.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
31.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
31.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
31.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
30.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
30.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
30.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
30.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
30.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
29.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
29.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
28.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
28.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
28.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
28.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
27.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
27.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
27.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
27.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
27.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
26.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
25.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
25.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
23.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
23.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
23.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
23.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
22.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
22.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
22.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
22.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
22.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
21.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
20.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
20.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
20.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
20.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
20.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
20.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
19.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
19.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
19.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
19.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
18.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
18.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
18.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
18.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
18.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
18.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
17.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
17.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
16.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
16.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
16.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
16.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
16.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
16.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
15.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
15.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
15.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
15.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
14.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
13.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
9.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
54.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 54.5
Samples: 4
Max nTPM: 59.4
Min nTPM: 48.4
Sample A
Male
59.4
Sample B
Male
52.6
Sample C
Female
48.4
Sample D
Female
57.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.