MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:304.8 nTPM
HPA Brain:201.6 nTPM
GTEx:304.8 nTPM
FANTOM5:269.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 201.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.1
1870 Female, age 42, unknown 192.2
1833 Male, age 53, unknown 184.2
1830 Male, age 51, unknown 181.4
1827 Male, age 72, unknown 180.2
2411 Female, age 72, unknown 179.4
2019 Male, age 18, unknown 178.2
2828 Female, age 72, unknown 176.7
2666 Male, age 74, left hemisphere 176.4
2219 Male, age 76, both hemispheres 157.9
2586 Male, age 75, left hemisphere 144.0
Dorsal raphe nucleus
nTPM: 160.0
2016 Female, age 72, unknown 176.0
2750 Male, age 76, both hemispheres 173.6
1828 Male, age 53, unknown 164.2
2298 Female, age 72, unknown 151.2
2047 Male, age 72, unknown 134.9
Inferior colliculus
nTPM: 170.0
2849 Male, age 72, unknown 186.7
1848 Female, age 42, unknown 169.8
2097 Female, age 72, unknown 162.0
1890 Male, age 53, unknown 161.5
Median raphe nucleus
nTPM: 147.4
2220 Male, age 76, midline 147.4
Periaquaductal grey, anterior
nTPM: 163.5
2502 Female, age 75, unknown 174.1
1947 Male, age 18, unknown 158.9
1795 Male, age 51, unknown 157.5
Periaquaductal grey, dorsal
nTPM: 175.6
2850 Male, age 76, both hemispheres 201.5
2464 Female, age 72, unknown 170.1
1831 Male, age 72, unknown 167.0
1840 Male, age 53, unknown 163.8
Periaquaductal grey, lateral
nTPM: 169.0
2140 Male, age 76, both hemispheres 175.9
2053 Male, age 18, unknown 168.8
2272 Male, age 74, both hemispheres 162.2
Pretectal area
nTPM: 179.0
1817 Female, age 42, unknown 208.3
1815 Male, age 53, unknown 200.2
2007 Male, age 72, unknown 187.8
1816 Male, age 51, unknown 178.6
2825 Male, age 18, unknown 176.4
1944 Female, age 72, unknown 174.1
2667 Female, age 75, unknown 173.2
2316 Male, age 76, right hemisphere 172.2
2224 Female, age 72, unknown 168.5
2273 Male, age 74, both hemispheres 165.2
2407 Male, age 75, both hemispheres 164.9
Red nucleus
nTPM: 201.6
2725 Female, age 75, unknown 215.5
2503 Female, age 72, unknown 215.1
1865 Male, age 51, unknown 214.5
2823 Male, age 76, right hemisphere 211.0
1904 Male, age 53, unknown 210.9
1821 Female, age 72, unknown 208.3
1954 Female, age 42, unknown 208.1
2227 Male, age 72, unknown 198.8
2785 Male, age 18, unknown 196.1
2769 Male, age 72, unknown 194.7
2588 Male, age 74, left hemisphere 185.6
2584 Male, age 75, left hemisphere 160.9
Substantia nigra
nTPM: 158.4
1889 Female, age 72, unknown 188.5
2699 Male, age 18, unknown 182.1
2665 Male, age 74, both hemispheres 163.3
2590 Female, age 75, unknown 159.2
2583 Male, age 75, right hemisphere 158.6
1851 Male, age 51, unknown 153.3
2409 Female, age 72, unknown 146.4
1941 Male, age 53, unknown 145.2
1916 Female, age 42, unknown 143.8
2241 Male, age 72, unknown 143.6
Superior colliculus
nTPM: 176.5
1913 Female, age 42, unknown 209.6
1995 Male, age 72, unknown 208.1
2587 Male, age 74, left hemisphere 192.2
1839 Male, age 51, unknown 179.9
1895 Male, age 76, right hemisphere 178.2
1796 Male, age 53, unknown 165.4
2087 Female, age 72, unknown 164.6
2261 Male, age 18, unknown 158.8
2668 Female, age 75, unknown 156.7
2664 Male, age 75, both hemispheres 151.3
Ventral tegmental area
nTPM: 158.1
2223 Female, age 72, unknown 173.1
2410 Female, age 72, unknown 162.8
2021 Male, age 53, unknown 159.4
2218 Male, age 76, both hemispheres 157.4
1915 Female, age 42, unknown 148.1
1942 Male, age 51, unknown 148.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 304.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 304.8
Samples: 183

Max nTPM: 578.2
Min nTPM: 180.6
Std nTPM: 72.4
Median nTPM: 293.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 578.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 555.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 555.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 523.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 489.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 485.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 481.2
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 456.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 456.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 435.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 420.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 269.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 269.4
FF:10158-103A5 76 years, female 269.4

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