HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.6 nTPM
HPA Brain:70.1 nTPM
GTEx:76.6 nTPM
FANTOM5:166.4 Scaled Tags Per Million
Pig:43.1 nTPM
Mouse:69.2 nTPM
Allen mouse:5.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 70.1
Sample id Sample description nTPM
Hippocampus
nTPM: 56.6
1911 Female, age 85, right hemisphere 67.9
2621 Female, age 67, right hemisphere 60.6
2529 Female, age 94, left hemisphere 57.3
1898 Male, age 80, left hemisphere 51.9
1855 Male, age 76, left hemisphere 51.7
2148 Female, age 91, left hemisphere 50.4
Dentate gyrus
nTPM: 64.3
2530 Female, age 94, left hemisphere 89.6
2010 Male, age 76, both hemispheres 67.6
2246 Female, age 85, both hemispheres 59.5
2531 Female, age 67, both hemispheres 57.8
1927 Female, age 91, both hemispheres 57.3
2528 Male, age 74, both hemispheres 53.9
Entorhinal gyrus
nTPM: 54.4
2117 Female, age 91, right hemisphere 81.9
2764 Male, age 80, right hemisphere 55.4
1938 Female, age 85, left hemisphere 51.0
2686 Male, age 75, right hemisphere 48.9
1787 Male, age 76, left hemisphere 46.7
2613 Female, age 94, left hemisphere 42.3
Hippocampus, CA1
nTPM: 59.5
2045 Male, age 76, both hemispheres 96.7
1873 Female, age 85, both hemispheres 61.7
2527 Male, age 74, both hemispheres 61.4
2082 Female, age 91, right hemisphere 44.7
2749 Male, age 80, left hemisphere 33.3
Hippocampus, CA2
nTPM: 59.2
2249 Male, age 74, both hemispheres 78.2
2437 Female, age 94, left hemisphere 64.8
1963 Male, age 80, left hemisphere 60.9
1940 Female, age 85, left hemisphere 52.7
1892 Male, age 76, both hemispheres 51.0
2113 Female, age 91, right hemisphere 47.7
Hippocampus, CA3
nTPM: 50.9
1891 Female, age 85, both hemispheres 89.1
1867 Male, age 76, both hemispheres 63.6
2620 Female, age 94, left hemisphere 50.8
2436 Male, age 74, both hemispheres 45.4
2861 Female, age 67, both hemispheres 33.4
2137 Male, age 80, left hemisphere 22.9
Parahippocampal cortex
nTPM: 48.3
2532 Female, age 72, left hemisphere 68.7
1990 Female, age 91, right hemisphere 57.8
2692 Male, age 74, both hemispheres 57.3
1850 Male, age 80, both hemispheres 54.9
2018 Male, age 76, both hemispheres 49.6
1933 Female, age 85, both hemispheres 46.4
2245 Female, age 91, both hemispheres 45.7
2693 Female, age 94, both hemispheres 42.4
2250 Female, age 67, right hemisphere 38.9
2622 Female, age 67, right hemisphere 21.4
Perirhinal gyrus
nTPM: 40.0
2848 Male, age 76, right hemisphere 48.3
1794 Male, age 80, right hemisphere 39.8
2521 Female, age 94, right hemisphere 38.8
1847 Female, age 91, left hemisphere 36.9
1841 Female, age 85, right hemisphere 36.3
Subiculum
nTPM: 70.1
2042 Male, age 76, both hemispheres 85.2
1901 Male, age 80, both hemispheres 81.9
1977 Female, age 85, both hemispheres 74.0
2438 Female, age 94, left hemisphere 71.7
2729 Female, age 91, right hemisphere 54.2
2619 Male, age 74, both hemispheres 53.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 76.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 76.6
Samples: 255

Max nTPM: 232.9
Min nTPM: 20.3
Std nTPM: 38.6
Median nTPM: 65.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 232.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 209.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 200.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 183.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 181.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 178.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 172.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 172.2
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 169.9
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 168.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 163.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 166.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 166.4
FF:10153-102I9 76 years, female 168.7
FF:10169-103B7 60 years, female 164.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 43.1
Pig sample Sample description nTPM
Subiculum
nTPM: 32.0
Samples: 4

Max nTPM: 43.4
Min nTPM: 23.2
Sample A Female 43.4
Sample B Female 31.9
Sample C Male 23.2
Sample D Male 29.4
Dorsal hippocampus
nTPM: 32.4
Samples: 4

Max nTPM: 41.7
Min nTPM: 17.5
Sample A Female 31.2
Sample B Female 39.0
Sample C Male 17.5
Sample D Male 41.7
Entorhinal cortex
nTPM: 43.2
Samples: 4

Max nTPM: 47.3
Min nTPM: 39.6
Sample A Female 39.6
Sample B Female 43.8
Sample C Male 47.3
Sample D Male 42.0
Ventral hippocampus
nTPM: 31.4
Samples: 4

Max nTPM: 39.0
Min nTPM: 20.8
Sample A Female 39.0
Sample B Female 27.3
Sample C Male 38.3
Sample D Male 20.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 69.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 69.2
Samples: 4

Max nTPM: 82.8
Min nTPM: 61.5
Sample A Male 68.3
Sample B Male 82.8
Sample C Female 64.3
Sample D Female 61.5
Hippocampal formation
nTPM: 64.9
Samples: 4

Max nTPM: 68.7
Min nTPM: 58.8
Sample A Male 68.7
Sample B Male 63.7
Sample C Female 68.3
Sample D Female 58.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
583547 Antisense, RP_040831_02_G04, Mouse strain C57BL/6J (56 days, male) 5.4
70634298 Antisense, RP_050725_01_F03, Mouse strain C57BL/6J (56 days, male) 4.8

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