MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.3 nTPM
HPA Brain:62.7 nTPM
GTEx:30.3 nTPM
FANTOM5:80.9 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:36.1 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.3
2219 Male, age 76, both hemispheres 55.9
2666 Male, age 74, left hemisphere 55.6
1833 Male, age 53, unknown 52.4
1870 Female, age 42, unknown 51.3
1830 Male, age 51, unknown 50.2
1827 Male, age 72, unknown 49.0
2411 Female, age 72, unknown 46.4
2586 Male, age 75, left hemisphere 44.1
2828 Female, age 72, unknown 41.0
2019 Male, age 18, unknown 37.5
Dorsal raphe nucleus
nTPM: 44.9
2047 Male, age 72, unknown 48.4
2750 Male, age 76, both hemispheres 47.7
1828 Male, age 53, unknown 45.4
2016 Female, age 72, unknown 44.0
2298 Female, age 72, unknown 38.9
Inferior colliculus
nTPM: 51.2
2849 Male, age 72, unknown 67.6
1848 Female, age 42, unknown 47.2
1890 Male, age 53, unknown 46.1
2097 Female, age 72, unknown 43.8
Median raphe nucleus
nTPM: 62.7
2220 Male, age 76, midline 62.7
Periaquaductal grey, anterior
nTPM: 47.6
1947 Male, age 18, unknown 53.2
2502 Female, age 75, unknown 46.1
1795 Male, age 51, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 50.7
1840 Male, age 53, unknown 55.7
2850 Male, age 76, both hemispheres 53.4
2464 Female, age 72, unknown 47.6
1831 Male, age 72, unknown 46.2
Periaquaductal grey, lateral
nTPM: 43.8
2140 Male, age 76, both hemispheres 49.5
2053 Male, age 18, unknown 46.8
2272 Male, age 74, both hemispheres 35.2
Pretectal area
nTPM: 44.6
2825 Male, age 18, unknown 55.1
2407 Male, age 75, both hemispheres 48.1
2224 Female, age 72, unknown 47.4
2316 Male, age 76, right hemisphere 47.3
1815 Male, age 53, unknown 44.2
1816 Male, age 51, unknown 44.0
1944 Female, age 72, unknown 44.0
1817 Female, age 42, unknown 42.2
2667 Female, age 75, unknown 41.0
2007 Male, age 72, unknown 40.6
2273 Male, age 74, both hemispheres 36.8
Red nucleus
nTPM: 48.1
2725 Female, age 75, unknown 60.1
2588 Male, age 74, left hemisphere 55.7
2584 Male, age 75, left hemisphere 53.8
2503 Female, age 72, unknown 51.6
2823 Male, age 76, right hemisphere 48.3
1954 Female, age 42, unknown 48.2
1821 Female, age 72, unknown 45.3
1865 Male, age 51, unknown 44.5
2227 Male, age 72, unknown 44.5
1904 Male, age 53, unknown 43.8
2769 Male, age 72, unknown 43.7
2785 Male, age 18, unknown 38.1
Substantia nigra
nTPM: 49.4
1916 Female, age 42, unknown 56.5
2699 Male, age 18, unknown 56.3
2241 Male, age 72, unknown 53.9
2665 Male, age 74, both hemispheres 51.4
1851 Male, age 51, unknown 49.8
1941 Male, age 53, unknown 48.3
2590 Female, age 75, unknown 45.5
2409 Female, age 72, unknown 45.0
1889 Female, age 72, unknown 44.4
2583 Male, age 75, right hemisphere 42.4
Superior colliculus
nTPM: 45.6
1895 Male, age 76, right hemisphere 57.6
1839 Male, age 51, unknown 50.3
2587 Male, age 74, left hemisphere 49.2
2664 Male, age 75, both hemispheres 47.5
1796 Male, age 53, unknown 44.2
1913 Female, age 42, unknown 43.3
2668 Female, age 75, unknown 43.3
2261 Male, age 18, unknown 42.2
2087 Female, age 72, unknown 39.5
1995 Male, age 72, unknown 39.1
Ventral tegmental area
nTPM: 48.5
2218 Male, age 76, both hemispheres 52.1
2223 Female, age 72, unknown 49.9
2021 Male, age 53, unknown 49.5
1942 Male, age 51, unknown 48.6
1915 Female, age 42, unknown 48.2
2410 Female, age 72, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 30.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.3
Samples: 183

Max nTPM: 46.7
Min nTPM: 12.9
Std nTPM: 5.8
Median nTPM: 30.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 46.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 44.1
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 44.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 43.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 42.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 42.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 42.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 40.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 40.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 39.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 80.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.9
FF:10158-103A5 76 years, female 80.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 20.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 23.5
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 18.6
Sample C Male 21.3
Sample D Male 23.5
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 19.1
Sample A Female 19.9
Sample B Female 19.1
Sample C Male 19.4
Sample D Male 20.7
Periaqueductal gray
nTPM: 19.0
Samples: 3

Max nTPM: 19.2
Min nTPM: 18.8
Sample B Female 19.2
Sample C Male 18.8
Sample D Male 19.1
Superior colliculi
nTPM: 19.5
Samples: 4

Max nTPM: 21.8
Min nTPM: 17.5
Sample A Female 17.5
Sample B Female 17.8
Sample C Male 20.7
Sample D Male 21.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 39.0
Min nTPM: 33.3
Sample A Male 33.3
Sample B Male 37.5
Sample C Female 39.0
Sample D Female 34.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
71283528 Antisense, RP_050825_01_A12, Mouse strain C57BL/6J (56 days, male) 0.9

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