MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.4 nTPM
HPA Brain:113.8 nTPM
GTEx:39.4 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:108.8 nTPM
Mouse:78.0 nTPM
Allen mouse:16.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 113.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.3
2666 Male, age 74, left hemisphere 133.9
2586 Male, age 75, left hemisphere 132.0
2019 Male, age 18, unknown 117.2
1827 Male, age 72, unknown 116.6
2828 Female, age 72, unknown 108.9
2219 Male, age 76, both hemispheres 94.4
2411 Female, age 72, unknown 92.1
1870 Female, age 42, unknown 86.5
1833 Male, age 53, unknown 78.3
1830 Male, age 51, unknown 73.0
Dorsal raphe nucleus
nTPM: 94.9
2298 Female, age 72, unknown 114.9
2047 Male, age 72, unknown 101.2
2750 Male, age 76, both hemispheres 95.3
1828 Male, age 53, unknown 92.5
2016 Female, age 72, unknown 70.3
Inferior colliculus
nTPM: 80.6
2097 Female, age 72, unknown 89.1
1848 Female, age 42, unknown 79.8
2849 Male, age 72, unknown 76.9
1890 Male, age 53, unknown 76.7
Median raphe nucleus
nTPM: 99.3
2220 Male, age 76, midline 99.3
Periaquaductal grey, anterior
nTPM: 113.8
1795 Male, age 51, unknown 132.1
2502 Female, age 75, unknown 105.8
1947 Male, age 18, unknown 103.4
Periaquaductal grey, dorsal
nTPM: 83.1
1831 Male, age 72, unknown 88.5
1840 Male, age 53, unknown 87.4
2850 Male, age 76, both hemispheres 78.5
2464 Female, age 72, unknown 77.9
Periaquaductal grey, lateral
nTPM: 87.4
2272 Male, age 74, both hemispheres 96.4
2053 Male, age 18, unknown 85.7
2140 Male, age 76, both hemispheres 80.0
Pretectal area
nTPM: 113.2
1816 Male, age 51, unknown 169.2
1944 Female, age 72, unknown 154.0
2007 Male, age 72, unknown 141.8
1817 Female, age 42, unknown 132.2
1815 Male, age 53, unknown 116.1
2667 Female, age 75, unknown 104.6
2224 Female, age 72, unknown 93.9
2407 Male, age 75, both hemispheres 90.6
2273 Male, age 74, both hemispheres 83.8
2825 Male, age 18, unknown 81.2
2316 Male, age 76, right hemisphere 78.3
Red nucleus
nTPM: 82.9
2785 Male, age 18, unknown 109.1
2584 Male, age 75, left hemisphere 98.4
2588 Male, age 74, left hemisphere 86.0
2503 Female, age 72, unknown 82.8
2725 Female, age 75, unknown 81.5
1821 Female, age 72, unknown 80.6
1954 Female, age 42, unknown 77.8
1904 Male, age 53, unknown 77.7
2227 Male, age 72, unknown 76.2
2769 Male, age 72, unknown 76.0
2823 Male, age 76, right hemisphere 75.4
1865 Male, age 51, unknown 73.6
Substantia nigra
nTPM: 106.8
1916 Female, age 42, unknown 140.8
1941 Male, age 53, unknown 139.7
1889 Female, age 72, unknown 118.9
1851 Male, age 51, unknown 114.1
2665 Male, age 74, both hemispheres 103.5
2583 Male, age 75, right hemisphere 102.9
2241 Male, age 72, unknown 93.2
2590 Female, age 75, unknown 91.6
2409 Female, age 72, unknown 82.2
2699 Male, age 18, unknown 80.9
Superior colliculus
nTPM: 106.6
2087 Female, age 72, unknown 141.4
2668 Female, age 75, unknown 134.6
2261 Male, age 18, unknown 131.8
1796 Male, age 53, unknown 125.2
2664 Male, age 75, both hemispheres 105.9
1913 Female, age 42, unknown 95.1
1839 Male, age 51, unknown 85.8
2587 Male, age 74, left hemisphere 83.9
1995 Male, age 72, unknown 83.5
1895 Male, age 76, right hemisphere 78.3
Ventral tegmental area
nTPM: 97.3
2410 Female, age 72, unknown 112.6
2218 Male, age 76, both hemispheres 111.0
1915 Female, age 42, unknown 104.5
1942 Male, age 51, unknown 92.3
2223 Female, age 72, unknown 85.2
2021 Male, age 53, unknown 78.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.4
Samples: 183

Max nTPM: 106.3
Min nTPM: 18.9
Std nTPM: 13.6
Median nTPM: 36.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 92.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 82.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 75.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 72.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 66.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 65.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 65.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 64.9
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 63.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 108.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.0
Samples: 4

Max nTPM: 115.5
Min nTPM: 56.6
Sample A Female 115.5
Sample B Female 70.2
Sample C Male 113.7
Sample D Male 56.6
Midbrain
nTPM: 106.9
Samples: 4

Max nTPM: 179.7
Min nTPM: 70.8
Sample A Female 73.3
Sample B Female 70.8
Sample C Male 179.7
Sample D Male 103.8
Periaqueductal gray
nTPM: 69.3
Samples: 3

Max nTPM: 82.3
Min nTPM: 57.2
Sample B Female 68.3
Sample C Male 82.3
Sample D Male 57.2
Superior colliculi
nTPM: 108.8
Samples: 4

Max nTPM: 140.7
Min nTPM: 83.0
Sample A Female 109.5
Sample B Female 83.0
Sample C Male 140.7
Sample D Male 102.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 78.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 83.6
Min nTPM: 72.5
Sample A Male 83.6
Sample B Male 72.5
Sample C Female 77.0
Sample D Female 79.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.2
69015655 Antisense, RP_050315_01_D10, Mouse strain C57BL/6J (56 days, male) 16.2

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