MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.5 nTPM
HPA Brain:12.4 nTPM
GTEx:1.5 nTPM
FANTOM5:22.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 12.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.8
1870 Female, age 42, unknown 13.1
1830 Male, age 51, unknown 12.9
2411 Female, age 72, unknown 12.9
2219 Male, age 76, both hemispheres 12.8
2666 Male, age 74, left hemisphere 12.1
1827 Male, age 72, unknown 11.9
1833 Male, age 53, unknown 11.8
2019 Male, age 18, unknown 10.9
2828 Female, age 72, unknown 10.0
2586 Male, age 75, left hemisphere 9.2
Dorsal raphe nucleus
nTPM: 11.2
2750 Male, age 76, both hemispheres 11.6
2016 Female, age 72, unknown 11.5
2047 Male, age 72, unknown 11.5
1828 Male, age 53, unknown 11.2
2298 Female, age 72, unknown 10.1
Inferior colliculus
nTPM: 10.7
2849 Male, age 72, unknown 11.0
1848 Female, age 42, unknown 10.9
2097 Female, age 72, unknown 10.5
1890 Male, age 53, unknown 10.3
Median raphe nucleus
nTPM: 10.0
2220 Male, age 76, midline 10.0
Periaquaductal grey, anterior
nTPM: 10.9
1947 Male, age 18, unknown 12.5
1795 Male, age 51, unknown 10.1
2502 Female, age 75, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 11.2
2850 Male, age 76, both hemispheres 12.0
1831 Male, age 72, unknown 11.2
2464 Female, age 72, unknown 11.2
1840 Male, age 53, unknown 10.3
Periaquaductal grey, lateral
nTPM: 12.4
2140 Male, age 76, both hemispheres 13.1
2272 Male, age 74, both hemispheres 12.3
2053 Male, age 18, unknown 11.9
Pretectal area
nTPM: 10.9
2273 Male, age 74, both hemispheres 12.7
2316 Male, age 76, right hemisphere 12.4
2667 Female, age 75, unknown 12.3
2825 Male, age 18, unknown 11.5
2224 Female, age 72, unknown 11.4
1815 Male, age 53, unknown 10.8
2007 Male, age 72, unknown 10.1
1944 Female, age 72, unknown 9.8
1816 Male, age 51, unknown 9.6
2407 Male, age 75, both hemispheres 9.6
1817 Female, age 42, unknown 9.3
Red nucleus
nTPM: 11.7
1954 Female, age 42, unknown 15.1
2823 Male, age 76, right hemisphere 13.5
1904 Male, age 53, unknown 12.7
1865 Male, age 51, unknown 12.6
2503 Female, age 72, unknown 11.9
2769 Male, age 72, unknown 11.5
1821 Female, age 72, unknown 10.9
2725 Female, age 75, unknown 10.9
2588 Male, age 74, left hemisphere 10.6
2227 Male, age 72, unknown 10.5
2785 Male, age 18, unknown 10.4
2584 Male, age 75, left hemisphere 9.3
Substantia nigra
nTPM: 10.6
2699 Male, age 18, unknown 12.0
2665 Male, age 74, both hemispheres 11.9
2409 Female, age 72, unknown 11.5
1941 Male, age 53, unknown 11.1
1851 Male, age 51, unknown 11.0
2583 Male, age 75, right hemisphere 10.7
2590 Female, age 75, unknown 10.6
2241 Male, age 72, unknown 10.0
1889 Female, age 72, unknown 9.2
1916 Female, age 42, unknown 7.8
Superior colliculus
nTPM: 11.3
1913 Female, age 42, unknown 14.8
1995 Male, age 72, unknown 12.8
1895 Male, age 76, right hemisphere 11.8
2664 Male, age 75, both hemispheres 11.6
2668 Female, age 75, unknown 11.2
2587 Male, age 74, left hemisphere 10.7
1839 Male, age 51, unknown 10.5
2087 Female, age 72, unknown 10.5
2261 Male, age 18, unknown 10.0
1796 Male, age 53, unknown 9.6
Ventral tegmental area
nTPM: 10.6
2021 Male, age 53, unknown 11.9
2223 Female, age 72, unknown 11.4
1942 Male, age 51, unknown 10.9
2410 Female, age 72, unknown 10.1
2218 Male, age 76, both hemispheres 9.8
1915 Female, age 42, unknown 9.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.5
Samples: 183

Max nTPM: 4.8
Min nTPM: 0.5
Std nTPM: 0.5
Median nTPM: 1.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.8
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 3.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 3.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 2.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 2.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 2.8
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 2.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 2.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 2.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.6
FF:10158-103A5 76 years, female 22.6

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo