MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.1 nTPM
HPA Brain:53.0 nTPM
GTEx:9.1 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:10.2 nTPM
Mouse:15.1 nTPM
Allen mouse:2.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.6
2666 Male, age 74, left hemisphere 38.8
2019 Male, age 18, unknown 38.5
2828 Female, age 72, unknown 34.5
2586 Male, age 75, left hemisphere 34.1
1827 Male, age 72, unknown 32.4
2219 Male, age 76, both hemispheres 26.9
2411 Female, age 72, unknown 22.8
1833 Male, age 53, unknown 21.0
1870 Female, age 42, unknown 19.5
1830 Male, age 51, unknown 17.3
Dorsal raphe nucleus
nTPM: 23.3
2298 Female, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 25.4
1828 Male, age 53, unknown 24.4
2047 Male, age 72, unknown 19.8
2016 Female, age 72, unknown 17.9
Inferior colliculus
nTPM: 18.7
2097 Female, age 72, unknown 22.1
1890 Male, age 53, unknown 21.3
1848 Female, age 42, unknown 15.9
2849 Male, age 72, unknown 15.4
Median raphe nucleus
nTPM: 31.7
2220 Male, age 76, midline 31.7
Periaquaductal grey, anterior
nTPM: 35.5
1795 Male, age 51, unknown 48.1
2502 Female, age 75, unknown 37.4
1947 Male, age 18, unknown 20.8
Periaquaductal grey, dorsal
nTPM: 25.4
1831 Male, age 72, unknown 32.4
2850 Male, age 76, both hemispheres 23.7
1840 Male, age 53, unknown 23.0
2464 Female, age 72, unknown 22.5
Periaquaductal grey, lateral
nTPM: 28.3
2272 Male, age 74, both hemispheres 32.6
2053 Male, age 18, unknown 28.1
2140 Male, age 76, both hemispheres 24.2
Pretectal area
nTPM: 53.0
1816 Male, age 51, unknown 99.6
1944 Female, age 72, unknown 81.9
2007 Male, age 72, unknown 81.0
1817 Female, age 42, unknown 79.6
1815 Male, age 53, unknown 70.4
2667 Female, age 75, unknown 55.7
2273 Male, age 74, both hemispheres 31.0
2224 Female, age 72, unknown 27.1
2825 Male, age 18, unknown 22.2
2407 Male, age 75, both hemispheres 19.2
2316 Male, age 76, right hemisphere 15.1
Red nucleus
nTPM: 19.6
2785 Male, age 18, unknown 37.6
2588 Male, age 74, left hemisphere 27.9
2584 Male, age 75, left hemisphere 27.1
2503 Female, age 72, unknown 19.3
2823 Male, age 76, right hemisphere 19.3
2769 Male, age 72, unknown 15.9
1954 Female, age 42, unknown 15.7
2227 Male, age 72, unknown 15.7
1904 Male, age 53, unknown 14.5
1821 Female, age 72, unknown 14.4
1865 Male, age 51, unknown 14.0
2725 Female, age 75, unknown 13.6
Substantia nigra
nTPM: 23.4
1889 Female, age 72, unknown 58.0
2665 Male, age 74, both hemispheres 33.0
1941 Male, age 53, unknown 20.9
2583 Male, age 75, right hemisphere 20.8
1851 Male, age 51, unknown 19.2
2409 Female, age 72, unknown 18.8
1916 Female, age 42, unknown 18.4
2699 Male, age 18, unknown 16.1
2241 Male, age 72, unknown 14.5
2590 Female, age 75, unknown 13.6
Superior colliculus
nTPM: 38.0
2087 Female, age 72, unknown 70.3
2261 Male, age 18, unknown 52.2
2668 Female, age 75, unknown 51.6
1913 Female, age 42, unknown 39.1
1796 Male, age 53, unknown 35.5
1995 Male, age 72, unknown 34.4
2664 Male, age 75, both hemispheres 29.7
2587 Male, age 74, left hemisphere 25.3
1839 Male, age 51, unknown 21.9
1895 Male, age 76, right hemisphere 20.1
Ventral tegmental area
nTPM: 19.3
2218 Male, age 76, both hemispheres 23.1
2410 Female, age 72, unknown 21.9
1942 Male, age 51, unknown 21.3
2021 Male, age 53, unknown 17.7
1915 Female, age 42, unknown 16.5
2223 Female, age 72, unknown 15.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.1
Samples: 183

Max nTPM: 24.7
Min nTPM: 1.5
Std nTPM: 3.9
Median nTPM: 8.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 24.7
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 21.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 17.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 16.7
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 16.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 16.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 15.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 15.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 15.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 14.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.8
Samples: 4

Max nTPM: 7.6
Min nTPM: 3.6
Sample A Female 7.5
Sample B Female 4.5
Sample C Male 7.6
Sample D Male 3.6
Midbrain
nTPM: 10.2
Samples: 4

Max nTPM: 27.4
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 5.6
Sample C Male 27.4
Sample D Male 6.0
Periaqueductal gray
nTPM: 8.0
Samples: 3

Max nTPM: 10.1
Min nTPM: 6.7
Sample B Female 7.2
Sample C Male 10.1
Sample D Male 6.7
Superior colliculi
nTPM: 6.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 5.8
Sample C Male 10.5
Sample D Male 5.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 16.3
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 14.5
Sample C Female 16.3
Sample D Female 15.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
68844456 Antisense, RP_050222_01_F07, Mouse strain C57BL/6J (56 days, male) 2.9
71924056 Antisense, RP_051017_02_H06, Mouse strain C57BL/6J (56 days, male) 2.6

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