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TBC1D9B
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  • TBC1D9B
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:95.1 nTPM
HPA Brain:112.9 nTPM
GTEx:95.1 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Pig:28.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 95.0
2194 Female, age 79, both hemispheres 103.8
2565 Male, age 75, midline 100.1
1981 Female, age 72, midline 94.3
2816 Male, age 47, midline 90.7
2048 Male, age 55, midline 85.9
Cervical spinal cord, dorsal horn
nTPM: 87.0
2296 Male, age 66, both hemispheres 112.3
2173 Female, age 72, unknown 110.4
2069 Male, age 47, both hemispheres 83.0
1877 Male, age 55, unknown 72.8
2721 Male, age 90, both hemispheres 72.6
2297 Male, age 75, both hemispheres 70.7
Cervical spinal cord, ventral horn
nTPM: 112.9
2480 Male, age 75, both hemispheres 125.2
2809 Male, age 90, both hemispheres 124.2
2295 Male, age 66, both hemispheres 114.0
2820 Female, age 79, both hemispheres 108.8
2098 Female, age 72, unknown 106.7
2068 Male, age 55, unknown 98.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 95.1
Samples: 204

Max nTPM: 184.2
Min nTPM: 38.6
Std nTPM: 23.7
Median nTPM: 94.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 184.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 171.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 157.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 157.5
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 152.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 148.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 145.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 143.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 141.0
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 139.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 139.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 137.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 136.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 136.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 135.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 133.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 131.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 131.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 127.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 127.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 126.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 126.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 124.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 124.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 122.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 117.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 116.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 116.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 115.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 115.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 113.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 113.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 113.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 113.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 113.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 112.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 112.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 111.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 111.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 111.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 111.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 111.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 110.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 109.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 108.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 108.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 107.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 107.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 107.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 107.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 107.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 106.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 106.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 106.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 105.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 105.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 104.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 104.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 103.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 103.6
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 103.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 103.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 103.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 103.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 103.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 102.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 102.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 102.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 102.1
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 101.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 101.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 100.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 100.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 99.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 99.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 99.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 98.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 97.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 97.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 97.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 97.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 97.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 97.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 96.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 96.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 96.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 96.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 96.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 96.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 96.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 95.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 95.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 95.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 95.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 95.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 94.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 94.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 94.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 94.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 94.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 94.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 93.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 93.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 93.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 92.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 92.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 92.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 92.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 92.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 91.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 91.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 91.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 90.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 90.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 90.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 90.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 90.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 89.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 88.9
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 88.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 88.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 87.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 86.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 86.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 86.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 86.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 86.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 85.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 85.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 85.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 85.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 84.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 84.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 84.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 84.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 84.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 84.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 84.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 83.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 83.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 83.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 83.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 83.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 83.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 82.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 82.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 81.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 81.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 80.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 80.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 80.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 80.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 79.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 79.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 79.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 78.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 77.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 77.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 77.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 76.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 76.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 76.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 76.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 75.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 75.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 74.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 74.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 74.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 73.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 73.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 72.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 71.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 71.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 70.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 68.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 68.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 68.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 67.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 67.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 67.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 66.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 65.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 64.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 64.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 63.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 61.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 61.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 60.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 54.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 54.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 53.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 53.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 50.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 50.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 49.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 47.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 46.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 38.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 67.5
FF:10159-103A6 76 years, female 71.4
FF:10181-103D1 60 years, female 63.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

28.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 26.3
Samples: 4

Max nTPM: 30.5
Min nTPM: 24.3
Sample A Female 25.0
Sample B Female 24.3
Sample C Male 30.5
Sample D Male 25.4
Ventral spinal cord
nTPM: 28.7
Samples: 4

Max nTPM: 31.1
Min nTPM: 26.5
Sample A Female 31.1
Sample B Female 27.3
Sample C Male 29.8
Sample D Male 26.5

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