MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.6 nTPM
HPA Brain:64.8 nTPM
GTEx:64.6 nTPM
FANTOM5:94.8 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:31.8 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.8
1833 Male, age 53, unknown 60.4
2019 Male, age 18, unknown 59.5
1830 Male, age 51, unknown 52.6
2411 Female, age 72, unknown 52.6
2666 Male, age 74, left hemisphere 51.8
2828 Female, age 72, unknown 50.7
1870 Female, age 42, unknown 50.1
1827 Male, age 72, unknown 49.6
2219 Male, age 76, both hemispheres 47.5
2586 Male, age 75, left hemisphere 42.9
Dorsal raphe nucleus
nTPM: 59.5
2047 Male, age 72, unknown 61.4
2298 Female, age 72, unknown 60.8
2750 Male, age 76, both hemispheres 60.4
1828 Male, age 53, unknown 57.6
2016 Female, age 72, unknown 57.6
Inferior colliculus
nTPM: 46.5
1890 Male, age 53, unknown 52.0
1848 Female, age 42, unknown 46.5
2097 Female, age 72, unknown 46.3
2849 Male, age 72, unknown 41.1
Median raphe nucleus
nTPM: 54.0
2220 Male, age 76, midline 54.0
Periaquaductal grey, anterior
nTPM: 49.9
1947 Male, age 18, unknown 52.0
1795 Male, age 51, unknown 51.2
2502 Female, age 75, unknown 46.4
Periaquaductal grey, dorsal
nTPM: 50.2
2850 Male, age 76, both hemispheres 56.6
2464 Female, age 72, unknown 52.4
1831 Male, age 72, unknown 47.0
1840 Male, age 53, unknown 44.6
Periaquaductal grey, lateral
nTPM: 54.9
2272 Male, age 74, both hemispheres 74.8
2140 Male, age 76, both hemispheres 47.1
2053 Male, age 18, unknown 42.9
Pretectal area
nTPM: 51.9
2273 Male, age 74, both hemispheres 65.4
2667 Female, age 75, unknown 59.4
2224 Female, age 72, unknown 56.2
1817 Female, age 42, unknown 51.9
1944 Female, age 72, unknown 51.0
2007 Male, age 72, unknown 50.8
1815 Male, age 53, unknown 48.5
2407 Male, age 75, both hemispheres 48.3
2825 Male, age 18, unknown 48.2
2316 Male, age 76, right hemisphere 46.3
1816 Male, age 51, unknown 45.1
Red nucleus
nTPM: 56.4
2725 Female, age 75, unknown 66.5
2823 Male, age 76, right hemisphere 62.8
1904 Male, age 53, unknown 62.3
2785 Male, age 18, unknown 59.7
1865 Male, age 51, unknown 57.6
2227 Male, age 72, unknown 53.6
2584 Male, age 75, left hemisphere 53.5
2769 Male, age 72, unknown 53.4
2588 Male, age 74, left hemisphere 52.7
1821 Female, age 72, unknown 52.1
2503 Female, age 72, unknown 52.0
1954 Female, age 42, unknown 50.1
Substantia nigra
nTPM: 64.8
1851 Male, age 51, unknown 79.8
1916 Female, age 42, unknown 79.5
2241 Male, age 72, unknown 79.1
2699 Male, age 18, unknown 77.0
2409 Female, age 72, unknown 74.5
1941 Male, age 53, unknown 59.5
1889 Female, age 72, unknown 52.1
2590 Female, age 75, unknown 51.0
2665 Male, age 74, both hemispheres 48.7
2583 Male, age 75, right hemisphere 47.1
Superior colliculus
nTPM: 48.4
2587 Male, age 74, left hemisphere 59.0
1995 Male, age 72, unknown 51.9
1913 Female, age 42, unknown 51.6
1796 Male, age 53, unknown 51.1
2087 Female, age 72, unknown 49.9
1895 Male, age 76, right hemisphere 49.0
2668 Female, age 75, unknown 47.1
1839 Male, age 51, unknown 45.2
2261 Male, age 18, unknown 41.0
2664 Male, age 75, both hemispheres 38.6
Ventral tegmental area
nTPM: 60.4
2410 Female, age 72, unknown 70.7
1915 Female, age 42, unknown 67.0
2218 Male, age 76, both hemispheres 61.6
2223 Female, age 72, unknown 58.2
1942 Male, age 51, unknown 53.9
2021 Male, age 53, unknown 50.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.6
Samples: 183

Max nTPM: 135.8
Min nTPM: 39.4
Std nTPM: 11.0
Median nTPM: 64.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 135.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 92.9
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 89.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 89.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 88.6
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 88.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 86.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 85.0
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 83.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 81.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 80.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.8
FF:10158-103A5 76 years, female 94.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 26.0
Min nTPM: 19.6
Sample A Female 19.6
Sample B Female 20.8
Sample C Male 19.6
Sample D Male 26.0
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 26.8
Min nTPM: 16.9
Sample A Female 26.8
Sample B Female 20.6
Sample C Male 16.9
Sample D Male 20.0
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 21.9
Min nTPM: 21.6
Sample B Female 21.9
Sample C Male 21.6
Sample D Male 21.9
Superior colliculi
nTPM: 20.9
Samples: 4

Max nTPM: 22.2
Min nTPM: 18.9
Sample A Female 18.9
Sample B Female 22.2
Sample C Male 20.7
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 35.2
Min nTPM: 29.7
Sample A Male 31.2
Sample B Male 31.0
Sample C Female 35.2
Sample D Female 29.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69015398 Antisense, RP_050310_02_H06, Mouse strain C57BL/6J (56 days, male) 0.0
72129245 Antisense, RP_051017_03_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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