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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Not detected
Cells in tubules: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:735.7 nTPM
HPA:211.5 nTPM
GTEx:735.7 nTPM
FANTOM5:37.0 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA043961
Cells in glomeruli Not detected
Cells in tubules Not detected



KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

211.5
overview
Female, age 58
Kidney sample 55
nTPM: 118.1
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 193.8
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 178.8
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 286.1
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 248.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 114.8
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 513.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 115.5
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 134.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

735.7
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 622.6
Samples: 104

Max nTPM: 1530.4
Min nTPM: 155.4
Std nTPM: 276.2
Median nTPM: 572.6
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 1530.4
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 1478.4
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 1245.8
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 1149.3
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 1139.8
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 1108.7
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 1101.0
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 1074.7
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 1035.6
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 1019.6
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 1011.1
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 981.7
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 980.2
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 968.6
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 948.8
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 913.6
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 905.1
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 873.4
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 859.9
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 827.5
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 824.9
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 822.1
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 802.8
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 795.0
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 790.0
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 785.3
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 782.4
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 774.9
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 772.5
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 771.1
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 766.7
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 761.5
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 742.7
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 739.7
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 730.4
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 703.2
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 679.0
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 670.0
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 669.9
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 660.1
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 656.7
GTEX-14C39-2126-SM-664OH 40-49 years, male 648.5
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 647.8
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 629.7
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 627.6
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 622.0
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 613.8
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 612.8
GTEX-13112-2126-SM-5GCO4 50-59 years, male 584.4
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 580.7
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 580.3
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 574.4
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 570.9
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 568.6
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 566.9
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 566.2
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 561.7
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 557.8
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 555.9
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 547.2
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 540.8
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 536.7
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 508.9
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 507.6
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 506.1
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 497.4
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 493.3
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 492.0
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 490.3
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 489.6
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 489.0
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 482.1
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 475.9
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 468.4
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 467.1
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 460.5
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 443.6
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 398.5
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 388.1
GTEX-O5YV-1226-SM-EV795 60-69 years, female 388.1
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 372.4
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 371.8
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 357.0
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 356.3
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 352.6
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 351.6
GTEX-12696-0926-SM-5FQTV 60-69 years, male 349.1
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 329.5
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 326.8
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 323.7
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 307.6
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 305.2
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 304.6
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 291.7
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 290.5
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 289.1
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 276.3
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 259.4
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 257.9
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 257.4
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 254.2
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 233.9
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 183.3
GTEX-RN64-1626-SM-48FD7 50-59 years, male 155.4
Show allShow less
Kidney - Medulla
Average nTPM: 735.7
Samples: 11

Max nTPM: 1628.4
Min nTPM: 221.4
Std nTPM: 418.5
Median nTPM: 628.6
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 1628.4
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 1311.6
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 969.6
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 959.3
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 631.3
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 628.6
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 537.3
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 495.7
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 454.1
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 254.9
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 221.4
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 37.0
FF:10017-101C8 60,62,63 years, female 37.0

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