MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:105.0 nTPM
HPA Brain:119.4 nTPM
GTEx:105.0 nTPM
FANTOM5:111.4 Scaled Tags Per Million
Pig:24.9 nTPM
Mouse:71.5 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 119.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.4
1870 Female, age 42, unknown 50.2
2666 Male, age 74, left hemisphere 39.4
2411 Female, age 72, unknown 33.5
1830 Male, age 51, unknown 31.7
2828 Female, age 72, unknown 30.4
1827 Male, age 72, unknown 22.9
1833 Male, age 53, unknown 20.5
2019 Male, age 18, unknown 16.1
2586 Male, age 75, left hemisphere 16.1
2219 Male, age 76, both hemispheres 13.5
Dorsal raphe nucleus
nTPM: 105.1
2047 Male, age 72, unknown 157.9
1828 Male, age 53, unknown 147.2
2298 Female, age 72, unknown 93.0
2016 Female, age 72, unknown 89.3
2750 Male, age 76, both hemispheres 38.3
Inferior colliculus
nTPM: 24.3
2097 Female, age 72, unknown 34.3
1890 Male, age 53, unknown 24.2
1848 Female, age 42, unknown 20.6
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 76.9
2220 Male, age 76, midline 76.9
Periaquaductal grey, anterior
nTPM: 119.4
1947 Male, age 18, unknown 180.1
1795 Male, age 51, unknown 109.9
2502 Female, age 75, unknown 68.3
Periaquaductal grey, dorsal
nTPM: 58.7
2850 Male, age 76, both hemispheres 127.7
1831 Male, age 72, unknown 48.9
2464 Female, age 72, unknown 31.9
1840 Male, age 53, unknown 26.3
Periaquaductal grey, lateral
nTPM: 76.0
2272 Male, age 74, both hemispheres 92.9
2140 Male, age 76, both hemispheres 79.3
2053 Male, age 18, unknown 55.8
Pretectal area
nTPM: 43.3
2273 Male, age 74, both hemispheres 101.3
2825 Male, age 18, unknown 81.0
2224 Female, age 72, unknown 71.2
2667 Female, age 75, unknown 50.0
2407 Male, age 75, both hemispheres 49.8
2316 Male, age 76, right hemisphere 39.6
1817 Female, age 42, unknown 22.0
1944 Female, age 72, unknown 19.2
1816 Male, age 51, unknown 16.1
1815 Male, age 53, unknown 15.6
2007 Male, age 72, unknown 11.0
Red nucleus
nTPM: 60.5
1954 Female, age 42, unknown 121.3
1865 Male, age 51, unknown 101.0
1821 Female, age 72, unknown 100.5
2227 Male, age 72, unknown 69.5
2769 Male, age 72, unknown 67.1
1904 Male, age 53, unknown 66.2
2725 Female, age 75, unknown 50.5
2823 Male, age 76, right hemisphere 47.8
2503 Female, age 72, unknown 39.4
2588 Male, age 74, left hemisphere 23.0
2584 Male, age 75, left hemisphere 21.8
2785 Male, age 18, unknown 17.3
Substantia nigra
nTPM: 36.8
1941 Male, age 53, unknown 101.8
2590 Female, age 75, unknown 39.0
1851 Male, age 51, unknown 36.2
2699 Male, age 18, unknown 35.7
2665 Male, age 74, both hemispheres 35.1
2409 Female, age 72, unknown 27.3
1916 Female, age 42, unknown 25.6
2241 Male, age 72, unknown 24.3
1889 Female, age 72, unknown 22.6
2583 Male, age 75, right hemisphere 20.6
Superior colliculus
nTPM: 40.4
1995 Male, age 72, unknown 67.4
2587 Male, age 74, left hemisphere 63.0
1913 Female, age 42, unknown 59.2
2261 Male, age 18, unknown 51.5
2664 Male, age 75, both hemispheres 40.6
2668 Female, age 75, unknown 34.3
1796 Male, age 53, unknown 25.9
2087 Female, age 72, unknown 25.2
1839 Male, age 51, unknown 24.8
1895 Male, age 76, right hemisphere 12.0
Ventral tegmental area
nTPM: 57.8
2223 Female, age 72, unknown 76.5
1915 Female, age 42, unknown 66.7
1942 Male, age 51, unknown 62.7
2021 Male, age 53, unknown 58.3
2410 Female, age 72, unknown 42.1
2218 Male, age 76, both hemispheres 40.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 105.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.0
Samples: 183

Max nTPM: 401.4
Min nTPM: 26.8
Std nTPM: 60.1
Median nTPM: 90.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 401.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 341.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 295.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 276.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 269.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 258.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 238.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 233.0
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 227.5
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 223.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 222.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 111.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 111.4
FF:10158-103A5 76 years, female 111.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 18.5
Sample A Female 27.2
Sample B Female 28.5
Sample C Male 19.2
Sample D Male 18.5
Midbrain
nTPM: 18.7
Samples: 4

Max nTPM: 32.2
Min nTPM: 12.9
Sample A Female 32.2
Sample B Female 16.6
Sample C Male 13.1
Sample D Male 12.9
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 24.8
Min nTPM: 14.7
Sample B Female 14.7
Sample C Male 24.8
Sample D Male 18.2
Superior colliculi
nTPM: 24.9
Samples: 4

Max nTPM: 44.8
Min nTPM: 15.0
Sample A Female 22.6
Sample B Female 44.8
Sample C Male 17.2
Sample D Male 15.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.5
Samples: 4

Max nTPM: 78.7
Min nTPM: 68.4
Sample A Male 68.5
Sample B Male 68.4
Sample C Female 70.3
Sample D Female 78.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
70560277 Antisense, RP_050330_01_A11, Mouse strain C57BL/6J (56 days, male) 1.8
79760442 Antisense, RP_071204_02_E10, Mouse strain C57BL/6J (56 days, male) 0.5

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