HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:102.6 nTPM
HPA Brain:45.6 nTPM
GTEx:102.6 nTPM
FANTOM5:94.1 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:71.6 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003340Antibody CAB025484
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 45.6
Sample id Sample description nTPM
Hippocampus
nTPM: 43.0
1898 Male, age 80, left hemisphere 61.1
1855 Male, age 76, left hemisphere 54.8
2529 Female, age 94, left hemisphere 43.5
2621 Female, age 67, right hemisphere 39.3
2148 Female, age 91, left hemisphere 30.2
1911 Female, age 85, right hemisphere 29.4
Dentate gyrus
nTPM: 45.6
2010 Male, age 76, both hemispheres 86.9
2528 Male, age 74, both hemispheres 51.6
2530 Female, age 94, left hemisphere 42.9
2246 Female, age 85, both hemispheres 38.9
2531 Female, age 67, both hemispheres 33.4
1927 Female, age 91, both hemispheres 19.9
Entorhinal gyrus
nTPM: 23.7
2117 Female, age 91, right hemisphere 36.6
1787 Male, age 76, left hemisphere 29.7
2764 Male, age 80, right hemisphere 27.2
1938 Female, age 85, left hemisphere 19.8
2686 Male, age 75, right hemisphere 18.6
2613 Female, age 94, left hemisphere 10.4
Hippocampus, CA1
nTPM: 37.7
2045 Male, age 76, both hemispheres 55.5
2082 Female, age 91, right hemisphere 42.7
1873 Female, age 85, both hemispheres 36.2
2527 Male, age 74, both hemispheres 35.0
2749 Male, age 80, left hemisphere 19.3
Hippocampus, CA2
nTPM: 40.0
2249 Male, age 74, both hemispheres 69.3
2437 Female, age 94, left hemisphere 44.8
1892 Male, age 76, both hemispheres 34.0
1940 Female, age 85, left hemisphere 33.3
2113 Female, age 91, right hemisphere 31.6
1963 Male, age 80, left hemisphere 27.1
Hippocampus, CA3
nTPM: 36.9
1867 Male, age 76, both hemispheres 49.3
2436 Male, age 74, both hemispheres 41.6
1891 Female, age 85, both hemispheres 40.2
2620 Female, age 94, left hemisphere 31.2
2137 Male, age 80, left hemisphere 30.8
2861 Female, age 67, both hemispheres 28.1
Parahippocampal cortex
nTPM: 24.4
2018 Male, age 76, both hemispheres 51.2
1850 Male, age 80, both hemispheres 28.8
2250 Female, age 67, right hemisphere 27.1
2245 Female, age 91, both hemispheres 26.3
1933 Female, age 85, both hemispheres 21.8
1990 Female, age 91, right hemisphere 20.1
2532 Female, age 72, left hemisphere 19.7
2693 Female, age 94, both hemispheres 17.8
2692 Male, age 74, both hemispheres 15.8
2622 Female, age 67, right hemisphere 15.5
Perirhinal gyrus
nTPM: 24.6
1847 Female, age 91, left hemisphere 32.9
2521 Female, age 94, right hemisphere 26.0
2848 Male, age 76, right hemisphere 23.5
1794 Male, age 80, right hemisphere 23.4
1841 Female, age 85, right hemisphere 17.5
Subiculum
nTPM: 37.1
2042 Male, age 76, both hemispheres 60.3
1901 Male, age 80, both hemispheres 41.4
2729 Female, age 91, right hemisphere 37.6
1977 Female, age 85, both hemispheres 34.3
2619 Male, age 74, both hemispheres 25.8
2438 Female, age 94, left hemisphere 23.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 102.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 102.6
Samples: 255

Max nTPM: 779.6
Min nTPM: 19.7
Std nTPM: 82.6
Median nTPM: 85.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 779.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 515.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 460.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 414.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 388.8
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 387.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 366.8
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 343.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 317.5
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 287.8
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 272.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 94.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 94.1
FF:10169-103B7 60 years, female 102.8
FF:10153-102I9 76 years, female 85.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 19.1
Pig sample Sample description nTPM
Subiculum
nTPM: 13.4
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.7
Sample A Female 11.7
Sample B Female 11.7
Sample C Male 14.4
Sample D Male 15.8
Dorsal hippocampus
nTPM: 12.8
Samples: 4

Max nTPM: 15.6
Min nTPM: 10.5
Sample A Female 15.6
Sample B Female 12.6
Sample C Male 12.6
Sample D Male 10.5
Entorhinal cortex
nTPM: 11.7
Samples: 4

Max nTPM: 13.5
Min nTPM: 10.5
Sample A Female 13.5
Sample B Female 11.2
Sample C Male 10.5
Sample D Male 11.7
Ventral hippocampus
nTPM: 19.2
Samples: 4

Max nTPM: 27.2
Min nTPM: 12.1
Sample A Female 27.2
Sample B Female 14.1
Sample C Male 23.2
Sample D Male 12.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 71.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 71.6
Samples: 4

Max nTPM: 78.2
Min nTPM: 60.1
Sample A Male 60.1
Sample B Male 74.3
Sample C Female 73.6
Sample D Female 78.2
Hippocampal formation
nTPM: 51.2
Samples: 4

Max nTPM: 68.0
Min nTPM: 35.5
Sample A Male 68.0
Sample B Male 48.0
Sample C Female 35.5
Sample D Female 53.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
70560277 Antisense, RP_050330_01_A11, Mouse strain C57BL/6J (56 days, male) 2.0
79760442 Antisense, RP_071204_02_E10, Mouse strain C57BL/6J (56 days, male) 0.6

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