MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:877.7 nTPM
HPA Brain:259.3 nTPM
GTEx:877.7 nTPM
FANTOM5:151.1 Scaled Tags Per Million
Pig:98.0 nTPM
Mouse:23.3 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 259.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.1
2828 Female, age 72, unknown 207.1
1870 Female, age 42, unknown 190.6
2666 Male, age 74, left hemisphere 161.4
1830 Male, age 51, unknown 160.5
2411 Female, age 72, unknown 147.5
2586 Male, age 75, left hemisphere 138.7
1833 Male, age 53, unknown 130.2
1827 Male, age 72, unknown 126.8
2019 Male, age 18, unknown 107.9
2219 Male, age 76, both hemispheres 80.2
Dorsal raphe nucleus
nTPM: 259.3
2047 Male, age 72, unknown 393.9
2298 Female, age 72, unknown 273.9
2016 Female, age 72, unknown 242.2
1828 Male, age 53, unknown 222.9
2750 Male, age 76, both hemispheres 163.4
Inferior colliculus
nTPM: 137.3
2097 Female, age 72, unknown 150.6
1848 Female, age 42, unknown 141.7
1890 Male, age 53, unknown 138.6
2849 Male, age 72, unknown 118.3
Median raphe nucleus
nTPM: 180.0
2220 Male, age 76, midline 180.0
Periaquaductal grey, anterior
nTPM: 203.7
1947 Male, age 18, unknown 231.6
2502 Female, age 75, unknown 191.9
1795 Male, age 51, unknown 187.8
Periaquaductal grey, dorsal
nTPM: 169.7
2850 Male, age 76, both hemispheres 228.4
1840 Male, age 53, unknown 176.7
2464 Female, age 72, unknown 143.5
1831 Male, age 72, unknown 130.2
Periaquaductal grey, lateral
nTPM: 238.2
2140 Male, age 76, both hemispheres 287.3
2053 Male, age 18, unknown 264.2
2272 Male, age 74, both hemispheres 163.1
Pretectal area
nTPM: 151.2
2825 Male, age 18, unknown 247.4
2273 Male, age 74, both hemispheres 210.2
2316 Male, age 76, right hemisphere 208.8
2224 Female, age 72, unknown 179.5
2407 Male, age 75, both hemispheres 167.5
2667 Female, age 75, unknown 156.6
1815 Male, age 53, unknown 114.0
1817 Female, age 42, unknown 113.1
1944 Female, age 72, unknown 94.6
2007 Male, age 72, unknown 90.2
1816 Male, age 51, unknown 81.3
Red nucleus
nTPM: 175.8
1865 Male, age 51, unknown 213.2
1954 Female, age 42, unknown 209.8
2725 Female, age 75, unknown 204.4
2769 Male, age 72, unknown 201.0
1904 Male, age 53, unknown 194.9
1821 Female, age 72, unknown 193.1
2227 Male, age 72, unknown 191.4
2503 Female, age 72, unknown 188.4
2823 Male, age 76, right hemisphere 165.2
2584 Male, age 75, left hemisphere 143.7
2588 Male, age 74, left hemisphere 116.6
2785 Male, age 18, unknown 88.6
Substantia nigra
nTPM: 201.0
1916 Female, age 42, unknown 261.4
2699 Male, age 18, unknown 243.4
1851 Male, age 51, unknown 242.2
2409 Female, age 72, unknown 237.6
2241 Male, age 72, unknown 236.1
1941 Male, age 53, unknown 220.6
2590 Female, age 75, unknown 164.1
2583 Male, age 75, right hemisphere 146.9
2665 Male, age 74, both hemispheres 133.3
1889 Female, age 72, unknown 124.3
Superior colliculus
nTPM: 134.6
2664 Male, age 75, both hemispheres 174.2
2587 Male, age 74, left hemisphere 170.8
1839 Male, age 51, unknown 151.0
1796 Male, age 53, unknown 141.9
1995 Male, age 72, unknown 133.2
2668 Female, age 75, unknown 125.3
1913 Female, age 42, unknown 122.3
2261 Male, age 18, unknown 116.2
2087 Female, age 72, unknown 106.3
1895 Male, age 76, right hemisphere 104.8
Ventral tegmental area
nTPM: 221.7
1915 Female, age 42, unknown 293.7
2223 Female, age 72, unknown 253.4
2021 Male, age 53, unknown 217.1
2410 Female, age 72, unknown 209.7
1942 Male, age 51, unknown 201.7
2218 Male, age 76, both hemispheres 154.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 877.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 877.7
Samples: 183

Max nTPM: 3173.5
Min nTPM: 235.1
Std nTPM: 463.8
Median nTPM: 741.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 3173.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 3103.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2676.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 2668.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 2056.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1936.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1905.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1779.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1769.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1726.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1551.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 151.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.1
FF:10158-103A5 76 years, female 151.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 98.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 98.0
Samples: 4

Max nTPM: 129.6
Min nTPM: 76.3
Sample A Female 129.6
Sample B Female 84.3
Sample C Male 76.3
Sample D Male 101.8
Midbrain
nTPM: 67.9
Samples: 4

Max nTPM: 162.9
Min nTPM: 32.2
Sample A Female 162.9
Sample B Female 32.2
Sample C Male 39.4
Sample D Male 37.1
Periaqueductal gray
nTPM: 38.6
Samples: 3

Max nTPM: 48.0
Min nTPM: 29.3
Sample B Female 29.3
Sample C Male 48.0
Sample D Male 38.6
Superior colliculi
nTPM: 53.9
Samples: 4

Max nTPM: 70.9
Min nTPM: 43.4
Sample A Female 70.9
Sample B Female 57.0
Sample C Male 43.4
Sample D Male 44.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 25.3
Min nTPM: 21.5
Sample A Male 25.3
Sample B Male 24.7
Sample C Female 21.7
Sample D Female 21.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75695667 Antisense, RP_060518_04_D06, Mouse strain C57BL/6J (56 days, male) 0.2
77278967 Antisense, RP_070116_01_A03, Mouse strain C57BL/6J (56 days, male) 0.1

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