MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:859.3 nTPM
HPA Brain:275.9 nTPM
GTEx:859.3 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Mouse:4.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 275.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 223.4
1870 Female, age 42, unknown 269.6
2666 Male, age 74, left hemisphere 248.8
2828 Female, age 72, unknown 242.2
1833 Male, age 53, unknown 231.7
1830 Male, age 51, unknown 231.1
2411 Female, age 72, unknown 221.5
2219 Male, age 76, both hemispheres 209.8
1827 Male, age 72, unknown 207.3
2019 Male, age 18, unknown 190.7
2586 Male, age 75, left hemisphere 181.4
Dorsal raphe nucleus
nTPM: 227.0
2016 Female, age 72, unknown 245.4
2298 Female, age 72, unknown 237.8
2750 Male, age 76, both hemispheres 230.4
1828 Male, age 53, unknown 213.3
2047 Male, age 72, unknown 208.0
Inferior colliculus
nTPM: 211.0
1890 Male, age 53, unknown 228.1
2849 Male, age 72, unknown 217.5
1848 Female, age 42, unknown 209.5
2097 Female, age 72, unknown 189.0
Median raphe nucleus
nTPM: 275.9
2220 Male, age 76, midline 275.9
Periaquaductal grey, anterior
nTPM: 217.1
2502 Female, age 75, unknown 227.5
1795 Male, age 51, unknown 216.2
1947 Male, age 18, unknown 207.6
Periaquaductal grey, dorsal
nTPM: 237.1
2850 Male, age 76, both hemispheres 275.0
1831 Male, age 72, unknown 244.8
1840 Male, age 53, unknown 225.2
2464 Female, age 72, unknown 203.3
Periaquaductal grey, lateral
nTPM: 241.0
2053 Male, age 18, unknown 250.3
2140 Male, age 76, both hemispheres 238.7
2272 Male, age 74, both hemispheres 233.8
Pretectal area
nTPM: 215.6
2224 Female, age 72, unknown 236.3
2316 Male, age 76, right hemisphere 230.7
1815 Male, age 53, unknown 229.7
1817 Female, age 42, unknown 229.6
2273 Male, age 74, both hemispheres 219.8
2825 Male, age 18, unknown 217.6
1944 Female, age 72, unknown 215.3
1816 Male, age 51, unknown 203.5
2007 Male, age 72, unknown 200.2
2407 Male, age 75, both hemispheres 198.8
2667 Female, age 75, unknown 190.3
Red nucleus
nTPM: 247.6
2503 Female, age 72, unknown 305.3
1865 Male, age 51, unknown 281.3
1904 Male, age 53, unknown 261.2
1821 Female, age 72, unknown 257.5
2725 Female, age 75, unknown 252.0
2769 Male, age 72, unknown 243.3
2785 Male, age 18, unknown 233.3
1954 Female, age 42, unknown 233.0
2584 Male, age 75, left hemisphere 231.8
2823 Male, age 76, right hemisphere 230.3
2227 Male, age 72, unknown 224.8
2588 Male, age 74, left hemisphere 217.7
Substantia nigra
nTPM: 264.0
2699 Male, age 18, unknown 346.3
1851 Male, age 51, unknown 299.1
2241 Male, age 72, unknown 278.8
2665 Male, age 74, both hemispheres 274.3
2409 Female, age 72, unknown 269.8
1916 Female, age 42, unknown 261.1
2590 Female, age 75, unknown 251.4
1889 Female, age 72, unknown 238.4
1941 Male, age 53, unknown 223.9
2583 Male, age 75, right hemisphere 197.3
Superior colliculus
nTPM: 233.7
2587 Male, age 74, left hemisphere 289.6
1913 Female, age 42, unknown 281.2
1995 Male, age 72, unknown 279.8
2668 Female, age 75, unknown 252.4
1796 Male, age 53, unknown 236.6
2261 Male, age 18, unknown 212.4
1839 Male, age 51, unknown 207.8
1895 Male, age 76, right hemisphere 204.4
2087 Female, age 72, unknown 200.1
2664 Male, age 75, both hemispheres 172.3
Ventral tegmental area
nTPM: 273.3
2223 Female, age 72, unknown 310.4
1915 Female, age 42, unknown 285.6
2218 Male, age 76, both hemispheres 271.7
2021 Male, age 53, unknown 268.9
2410 Female, age 72, unknown 267.9
1942 Male, age 51, unknown 235.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 859.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 859.3
Samples: 183

Max nTPM: 2153.7
Min nTPM: 253.8
Std nTPM: 326.3
Median nTPM: 799.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2153.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 1993.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1829.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1585.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1548.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1540.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1515.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1498.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1470.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1428.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1413.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.7
FF:10158-103A5 76 years, female 8.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 2.9
Sample A Male 5.6
Sample B Male 2.9
Sample C Female 3.4
Sample D Female 3.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70813317 Antisense, RP_050712_03_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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