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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14384.7
Sample id
Sample description
nTPM
Amygdala nTPM: 10121.7
2695
Female, age 67, right hemisphere
18372.4
2814
Male, age 76, right hemisphere
13741.9
2517
Female, age 94, left hemisphere
6640.3
2514
Male, age 75, right hemisphere
6465.9
1987
Female, age 91, left hemisphere
5388.0
Basal amygdala nTPM: 8509.0
2827
Female, age 67, right hemisphere
20597.6
2685
Female, age 94, left hemisphere
7751.9
2110
Male, age 80, left hemisphere
7146.3
2609
Male, age 75, right hemisphere
6660.5
1955
Male, age 76, both hemispheres
6043.9
2243
Female, age 91, right hemisphere
2853.8
Central amygdala nTPM: 11875.2
2826
Female, age 94, left hemisphere
28265.6
1905
Male, age 76, both hemispheres
9390.9
2515
Male, age 75, right hemisphere
7997.8
2239
Male, age 80, left hemisphere
7008.7
2701
Female, age 91, right hemisphere
6713.2
Corticomedial amygdala nTPM: 4535.6
2535
Female, age 67, right hemisphere
9917.4
2428
Male, age 75, right hemisphere
5460.3
2829
Male, age 80, left hemisphere
4121.1
2240
Male, age 76, both hemispheres
3881.0
2429
Female, age 94, left hemisphere
2526.4
2242
Female, age 91, right hemisphere
1307.4
Lateral amygdala nTPM: 14384.7
2830
Female, age 67, right hemisphere
32190.1
2534
Female, age 94, left hemisphere
13674.1
2256
Male, age 80, left hemisphere
12221.7
2516
Male, age 75, right hemisphere
11592.3
1883
Male, age 76, both hemispheres
10462.2
2255
Female, age 91, right hemisphere
6167.6
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15029.3
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 15029.3
Samples: 181
Max nTPM: 62851.2
Min nTPM: 877.2
Std nTPM: 11766.9
Median nTPM: 10549.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
62851.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
53493.2
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
51864.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
49656.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
43071.7
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
42978.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
40483.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
40454.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
38501.9
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
38079.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
37687.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
37397.7
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
37210.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
36982.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
36505.5
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
34296.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
33218.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
33178.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
32896.3
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
32859.9
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
32761.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
32486.7
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
32190.5
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
31399.3
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
31098.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
30910.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
30295.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
30064.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
28490.9
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
27669.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
25730.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
25258.1
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
25097.8
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
24649.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
23661.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
23428.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
23032.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
22600.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
21965.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
21664.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
21343.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
21338.0
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
20885.7
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
19902.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
19344.7
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
19317.9
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
19272.8
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
18595.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
18452.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
18131.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
17857.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
17657.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
17348.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
17254.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
17081.6
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
16934.9
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
16871.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
16673.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
16494.9
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
16413.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
16313.7
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
15934.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
15881.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
15811.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
15486.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
15377.2
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
15142.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
14500.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
14429.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
14272.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
13885.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
13704.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
13387.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
13355.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
13005.8
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
12981.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
12734.5
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
12642.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
12346.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
12237.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
12097.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
12090.5
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
12059.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
11773.9
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
11676.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
11404.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
11382.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
11341.5
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
11275.0
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
10914.9
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
10549.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
10380.5
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
10361.8
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
10284.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
10168.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
9686.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
9677.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
9439.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
9307.9
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
9300.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
9257.9
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
9139.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
9136.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
9085.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
8961.0
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
8923.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
8769.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
8745.1
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
8722.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
8683.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
8631.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
8601.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
8548.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
8536.7
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
8410.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
8221.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
8199.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
8066.9
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
8012.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
7961.3
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
7926.9
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
7774.8
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
7700.4
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
7612.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
7355.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
7336.4
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
7258.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
6996.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
6984.6
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
6787.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
6764.5
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
6723.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
6702.1
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
6502.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
6459.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
6244.5
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
6223.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
6168.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
6091.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
6082.4
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
5993.4
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
5977.5
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
5879.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
5782.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
5753.5
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
5604.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
5565.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
5428.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
5373.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
5289.3
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
5253.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
5200.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
5188.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
5182.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
5167.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
5096.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
5049.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
4823.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
4781.9
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
4682.8
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
4661.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
4606.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
4511.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
4490.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
4413.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
4411.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
4362.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
4209.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
4200.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
4099.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
3991.9
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
3925.8
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
3786.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
3751.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
3739.0
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
3650.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
3575.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
2902.1
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
2715.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
2141.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
877.2
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2984.8
Pig sample
Sample description
nTPM
Amygdala nTPM: 2984.9
Samples: 4
Max nTPM: 5355.0
Min nTPM: 1390.0
Sample A
Female
1772.6
Sample B
Female
5355.0
Sample C
Male
3421.8
Sample D
Male
1390.0
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1502.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 1502.7
Samples: 4
Max nTPM: 2630.2
Min nTPM: 1111.3
Sample A
Male
1111.3
Sample B
Male
1137.2
Sample C
Female
2630.2
Sample D
Female
1131.9
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
