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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

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  • MBP
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:6754.6 nTPM
FANTOM5:2463.2 Scaled Tags Per Million
Pig:2206.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049222Antibody CAB002300
Glial cells LowHigh
Neuronal cells Not detectedNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6754.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6754.6
Samples: 300

Max nTPM: 96356.1
Min nTPM: 507.3
Std nTPM: 7695.5
Median nTPM: 4631.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 96356.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 45795.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 31708.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 29661.7
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 28903.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 27530.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 24795.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 20378.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 19529.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 19372.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 18673.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 18500.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 18062.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 18041.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 17203.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 17150.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 16729.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 16654.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 16501.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 16443.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 15949.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 15789.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 15514.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 15499.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 15413.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 15379.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 15238.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 15082.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 14767.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 14279.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 14105.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 13196.0
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 12177.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 12027.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 12007.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 11963.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 11932.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 11923.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 11846.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 11715.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 11694.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 11618.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 11482.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 11306.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 11285.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 11281.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 11171.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 11100.4
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 11089.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 10931.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 10721.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 10428.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 10371.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 10176.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 10157.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 10111.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 10087.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 9916.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 9890.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 9750.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 9698.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 9675.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 9656.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 9570.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 9351.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 9349.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 9347.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 9343.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 9235.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 9085.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 8996.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 8743.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 8726.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 8657.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 8607.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 8456.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8454.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 8256.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 8255.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 8255.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 8196.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 7945.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 7943.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 7935.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 7835.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 7742.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 7720.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 7580.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 7553.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 7514.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 7480.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 7332.2
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 7325.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 7313.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 7290.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 7163.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 7122.2
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 7100.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 7100.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 7056.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 6816.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 6797.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 6664.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 6663.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 6619.0
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 6602.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 6592.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 6555.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 6456.2
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 6419.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 6110.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 6107.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 6070.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 5996.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 5924.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 5918.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 5856.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 5705.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 5661.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 5617.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 5578.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 5565.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 5502.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 5496.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 5397.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 5354.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 5302.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 5259.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 5249.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 5240.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 5073.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 5062.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 5056.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 5024.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 5014.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 5007.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 4979.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 4975.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 4940.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 4904.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 4880.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 4854.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 4816.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 4774.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 4765.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 4731.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 4729.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 4716.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 4696.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 4666.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 4596.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 4593.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 4578.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4508.5
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 4493.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 4468.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 4436.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 4396.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 4352.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4347.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 4329.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4306.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 4289.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 4261.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 4256.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 4254.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 4174.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 4172.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 4135.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 4127.5
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 4099.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 4051.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 4021.1
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 3997.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 3989.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 3972.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 3970.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 3949.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 3924.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3835.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 3826.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 3809.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 3808.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 3793.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 3771.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3770.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 3761.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 3733.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 3712.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 3696.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 3668.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 3658.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 3622.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 3612.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 3593.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 3593.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 3559.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 3510.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 3380.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 3380.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 3359.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3348.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 3340.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3285.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 3274.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 3272.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 3238.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 3231.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 3161.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 3156.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 3101.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 3076.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 3003.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 2984.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 2983.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 2970.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 2967.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2964.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2837.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 2778.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 2743.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2731.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 2703.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 2666.5
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 2636.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2623.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2619.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2528.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2527.4
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2508.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2468.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2457.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 2445.9
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2445.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 2433.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2410.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2409.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2399.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2385.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2371.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2352.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 2324.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 2282.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 2253.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 2233.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2219.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2152.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2137.0
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 2128.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2127.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 2109.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 2105.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2099.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 2061.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 2001.9
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1976.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1953.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1940.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1929.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1921.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1912.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1855.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1802.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1779.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1779.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1765.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1746.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1732.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1723.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1720.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1720.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1719.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 1695.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1664.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1644.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1623.8
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1563.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1485.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1476.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1445.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1429.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1422.5
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1400.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1370.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1338.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1320.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1302.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1257.9
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1247.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1192.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1098.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1088.2
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1061.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1008.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 951.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 941.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 799.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 686.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 675.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 507.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2463.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2463.2
FF:10164-103B2 76 years, female 2463.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2206.4
Pig sample Sample description nTPM
Caudate
nTPM: 2206.4
Samples: 4

Max nTPM: 2575.7
Min nTPM: 1795.0
Sample A Female 1989.2
Sample B Female 1795.0
Sample C Male 2575.7
Sample D Male 2465.8

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