We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
MBP
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • MBP
TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
Tissue methods
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

148.518
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:5876.4 nTPM
GTEx:19948.4 nTPM
FANTOM5:5781.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA049222Antibody CAB002300
Glial cells LowHigh
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity.

, antibody HPA049222
Hippocampal formation mean intensity 148.518
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity.

FRONT BACK
Polymorph layer of the dentate gyrus 138.668
Molecular layer of the dentate gyrus 125.026
Granular dentate gyrus 81.975
CA1 - oriens layer 130.037
CA1 - pyramidal layer 110.896
CA1 - radiatum layer 123.111
CA2 - oriens layer 116.883
CA2 - pyramidal layer 100.441
CA2 - radiatum layer 140.682
CA3 - oriens layer 97.050
CA3 - pyramidal layer 109.094
CA3 - radiatum layer 140.054
Stratum lucidum 148.518
Lacunosum moleculare 143.709
Subiculum 87.033

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5876.4
Sample id Sample description nTPM
Hippocampus
nTPM: 5876.4
2529 Female, age 94, left hemisphere 7621.4
1911 Female, age 85, right hemisphere 6655.1
2621 Female, age 67, right hemisphere 6564.2
1898 Male, age 80, left hemisphere 5893.6
2148 Female, age 91, left hemisphere 4497.5
1855 Male, age 76, left hemisphere 4026.8

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19948.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19948.4
Samples: 255

Max nTPM: 105807.3
Min nTPM: 2046.1
Std nTPM: 15801.5
Median nTPM: 15337.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 105807.3
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 100376.8
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 90936.7
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 87416.8
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 79710.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 70519.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 62887.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 62523.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 60880.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 59399.0
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 55332.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 54387.6
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 50202.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 47640.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 43598.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 41547.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 40196.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 39568.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 39529.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 38499.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 38200.6
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 37523.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 37256.6
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 37091.0
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 36337.5
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 36327.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 35638.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 35374.8
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 35078.6
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 34770.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 33964.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 33767.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 33199.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 32509.7
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 32402.7
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 32286.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 31731.7
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 31584.4
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 30712.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 30672.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 30643.6
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 30309.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 30148.5
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 30134.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 30110.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 30010.2
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 29953.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 29073.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 28348.9
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 28243.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 28083.2
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 27936.7
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 27685.6
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 27685.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 26980.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 26923.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 26836.5
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 26731.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 26234.9
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 26199.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 25724.8
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 25371.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 25127.0
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 24985.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 24785.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 24434.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 24367.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 24042.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 23869.1
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 23826.6
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 23775.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 23712.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 23093.0
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 23065.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 22461.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 22061.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 21964.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 21790.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 21441.7
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 21391.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 21060.0
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 21023.9
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 20971.7
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 20716.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 20610.0
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 20576.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 20466.7
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 19985.8
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 19796.6
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 19791.4
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 19556.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 19488.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 19406.6
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 19391.3
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 19205.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 19085.1
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 19056.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 18884.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 18828.7
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 18757.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 18614.2
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 18474.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 18335.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 17899.3
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 17878.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 17661.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 17566.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 17488.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 17368.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 17325.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 17231.0
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 17143.1
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 17021.7
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 17007.2
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 16866.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 16805.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 16677.0
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 16523.9
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 16471.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 16362.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 16031.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 15914.1
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 15897.5
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 15858.4
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 15721.7
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 15621.5
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 15610.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 15337.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 15154.8
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 15123.7
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 15058.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 15025.4
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 14913.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 14820.0
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 14782.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 14764.5
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 14578.7
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 14554.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 14551.2
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 14480.2
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 14442.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 14314.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 14110.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 14017.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 13884.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 13876.2
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 13809.7
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 13803.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 13730.4
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 13670.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 13642.6
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 13577.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 13574.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 13478.1
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 13422.2
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 13408.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 13402.1
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 13391.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 13070.1
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 13028.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 12906.3
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 12899.5
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 12860.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 12653.3
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 12437.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 12391.4
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 12311.9
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 12184.9
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 12068.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 12010.2
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 11937.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 11856.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 11766.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 11761.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 11738.4
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 11402.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 11314.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 11287.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 11106.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 11072.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 10947.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 10924.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 10825.2
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 10609.7
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 10198.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 10156.5
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 10102.1
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 10060.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 10054.4
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 10019.8
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 10015.1
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 9993.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 9882.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 9861.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 9828.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 9752.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 9744.3
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 9631.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 9558.0
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 9557.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 9523.8
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 9495.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 9443.8
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 9417.1
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 9342.8
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 9115.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 8762.0
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 8704.2
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 8702.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 8677.1
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 8651.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 8647.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 8646.2
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 8537.6
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 8527.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 8497.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 8472.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 8458.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 8373.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 8370.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 8282.7
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 7959.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 7162.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 7087.2
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 7067.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 7046.7
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 6854.1
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 6842.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 6781.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 6650.9
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 6617.1
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 6611.0
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 6339.1
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 6318.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 6168.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 5964.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 5921.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 5880.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 5688.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5653.4
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 5557.4
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 4827.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 4711.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 4677.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 4498.4
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 4333.7
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 4297.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 4231.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 4060.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 3624.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 3430.3
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 3203.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2543.9
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 2068.8
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 2046.1
Show allShow less

HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5781.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5781.0
FF:10153-102I9 76 years, female 6603.9
FF:10169-103B7 60 years, female 4958.1

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo