MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.1 nTPM
HPA Brain:20.4 nTPM
GTEx:16.1 nTPM
FANTOM5:182.7 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:62.8 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.7
1870 Female, age 42, unknown 25.6
2411 Female, age 72, unknown 25.2
1830 Male, age 51, unknown 22.6
2019 Male, age 18, unknown 22.1
1833 Male, age 53, unknown 20.8
1827 Male, age 72, unknown 18.4
2666 Male, age 74, left hemisphere 18.0
2219 Male, age 76, both hemispheres 17.1
2586 Male, age 75, left hemisphere 13.6
2828 Female, age 72, unknown 13.5
Dorsal raphe nucleus
nTPM: 16.6
2750 Male, age 76, both hemispheres 22.1
1828 Male, age 53, unknown 15.9
2047 Male, age 72, unknown 15.3
2016 Female, age 72, unknown 15.2
2298 Female, age 72, unknown 14.4
Inferior colliculus
nTPM: 18.7
2097 Female, age 72, unknown 21.1
1848 Female, age 42, unknown 19.6
2849 Male, age 72, unknown 17.6
1890 Male, age 53, unknown 16.3
Median raphe nucleus
nTPM: 19.5
2220 Male, age 76, midline 19.5
Periaquaductal grey, anterior
nTPM: 20.4
1947 Male, age 18, unknown 23.0
2502 Female, age 75, unknown 21.2
1795 Male, age 51, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 16.5
2464 Female, age 72, unknown 18.2
1831 Male, age 72, unknown 17.2
1840 Male, age 53, unknown 17.1
2850 Male, age 76, both hemispheres 13.6
Periaquaductal grey, lateral
nTPM: 14.4
2272 Male, age 74, both hemispheres 15.8
2053 Male, age 18, unknown 15.6
2140 Male, age 76, both hemispheres 11.9
Pretectal area
nTPM: 19.5
2007 Male, age 72, unknown 24.4
1944 Female, age 72, unknown 22.9
1816 Male, age 51, unknown 22.7
1817 Female, age 42, unknown 22.0
1815 Male, age 53, unknown 20.8
2825 Male, age 18, unknown 17.5
2224 Female, age 72, unknown 17.3
2273 Male, age 74, both hemispheres 17.2
2667 Female, age 75, unknown 17.1
2316 Male, age 76, right hemisphere 16.1
2407 Male, age 75, both hemispheres 16.1
Red nucleus
nTPM: 19.9
1821 Female, age 72, unknown 24.0
2503 Female, age 72, unknown 23.4
2785 Male, age 18, unknown 20.2
1954 Female, age 42, unknown 20.0
1904 Male, age 53, unknown 19.8
2823 Male, age 76, right hemisphere 19.4
2725 Female, age 75, unknown 19.1
2588 Male, age 74, left hemisphere 18.9
1865 Male, age 51, unknown 18.7
2584 Male, age 75, left hemisphere 18.7
2227 Male, age 72, unknown 18.1
2769 Male, age 72, unknown 17.9
Substantia nigra
nTPM: 17.2
1889 Female, age 72, unknown 21.9
1941 Male, age 53, unknown 19.6
2241 Male, age 72, unknown 19.5
2409 Female, age 72, unknown 19.0
2583 Male, age 75, right hemisphere 17.4
2590 Female, age 75, unknown 17.0
1851 Male, age 51, unknown 16.1
1916 Female, age 42, unknown 15.2
2665 Male, age 74, both hemispheres 13.6
2699 Male, age 18, unknown 12.8
Superior colliculus
nTPM: 18.0
1913 Female, age 42, unknown 19.9
2668 Female, age 75, unknown 19.9
2587 Male, age 74, left hemisphere 19.8
1895 Male, age 76, right hemisphere 19.0
2087 Female, age 72, unknown 18.7
1839 Male, age 51, unknown 18.6
2261 Male, age 18, unknown 18.0
1995 Male, age 72, unknown 16.8
1796 Male, age 53, unknown 15.6
2664 Male, age 75, both hemispheres 13.9
Ventral tegmental area
nTPM: 18.2
2223 Female, age 72, unknown 23.1
2410 Female, age 72, unknown 19.4
2021 Male, age 53, unknown 17.3
2218 Male, age 76, both hemispheres 16.8
1942 Male, age 51, unknown 16.6
1915 Female, age 42, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.1
Samples: 183

Max nTPM: 39.1
Min nTPM: 6.4
Std nTPM: 5.2
Median nTPM: 15.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 33.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 31.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 30.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 28.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 27.9
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 27.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 26.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 24.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 24.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 182.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 182.7
FF:10158-103A5 76 years, female 182.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 27.3
Min nTPM: 17.8
Sample A Female 27.3
Sample B Female 19.2
Sample C Male 25.8
Sample D Male 17.8
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 36.6
Min nTPM: 15.2
Sample A Female 36.6
Sample B Female 23.2
Sample C Male 15.2
Sample D Male 15.2
Periaqueductal gray
nTPM: 20.6
Samples: 3

Max nTPM: 22.4
Min nTPM: 19.2
Sample B Female 19.2
Sample C Male 22.4
Sample D Male 20.1
Superior colliculi
nTPM: 14.3
Samples: 4

Max nTPM: 16.4
Min nTPM: 9.4
Sample A Female 16.4
Sample B Female 9.4
Sample C Male 15.5
Sample D Male 15.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 62.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.8
Samples: 4

Max nTPM: 67.1
Min nTPM: 58.0
Sample A Male 64.6
Sample B Male 67.1
Sample C Female 61.5
Sample D Female 58.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70227920 Antisense, RP_050524_02_B06, Mouse strain C57BL/6J (56 days, male) 1.5
73931622 Antisense, RP_051214_04_A02, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo