We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.8
nTPM
Monaco:
13.2
nTPM
Schmiedel:
55.8
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.8
HPA sample
nTPM
gdT-cell nTPM: 8.0
Samples: 6
Max nTPM: 8.8
Min nTPM: 7.3
P10809_1007
7.4
P10809_1022
7.3
P10809_1041
8.8
P10809_1060
7.3
P10809_1077
8.7
P10809_1098
8.6
MAIT T-cell nTPM: 10.6
Samples: 6
Max nTPM: 12.3
Min nTPM: 7.3
P10809_1006
7.3
P10809_1024
10.8
P10809_1043
10.1
P10809_1062
10.8
P10809_1083
12.3
P10809_1097
12.3
Memory CD4 T-cell nTPM: 12.9
Samples: 6
Max nTPM: 16.3
Min nTPM: 9.8
P10809_1014
9.8
P10809_1026
16.3
P10809_1045
12.7
P10809_1064
11.5
P10809_1086
13.0
P10809_1113
13.8
Memory CD8 T-cell nTPM: 9.1
Samples: 5
Max nTPM: 10.0
Min nTPM: 7.5
P10809_1012
8.4
P10809_1027
10.0
P10809_1046
9.9
P10809_1065
7.5
P10809_1111
9.5
Naive CD4 T-cell nTPM: 15.8
Samples: 6
Max nTPM: 19.3
Min nTPM: 10.7
P10809_1015
10.7
P10809_1030
17.6
P10809_1049
19.3
P10809_1068
15.4
P10809_1085
16.4
P10809_1112
15.6
Naive CD8 T-cell nTPM: 11.4
Samples: 6
Max nTPM: 14.8
Min nTPM: 8.2
P10809_1016
11.6
P10809_1031
14.8
P10809_1050
11.6
P10809_1069
10.8
P10809_1087
8.2
P10809_1110
11.2
T-reg nTPM: 9.6
Samples: 6
Max nTPM: 12.9
Min nTPM: 5.6
P10809_1018
5.6
P10809_1037
9.9
P10809_1056
10.5
P10809_1075
8.8
P10809_1094
12.9
P10809_1106
10.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.2
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 9.7
Samples: 4
Max nTPM: 13.0
Min nTPM: 6.5
RHH5202_R3573
13.0
RHH5230_R3602
6.5
RHH5259_R3631
9.3
RHH5288_R3660
10.0
Effector memory CD8 T-cell nTPM: 5.3
Samples: 4
Max nTPM: 7.7
Min nTPM: 4.0
RHH5203_R3574
7.7
RHH5231_R3603
4.0
RHH5260_R3632
4.1
RHH5289_R3661
5.5
MAIT T-cell nTPM: 11.0
Samples: 4
Max nTPM: 11.7
Min nTPM: 9.8
RHH5233_R3605
11.3
RHH5205_R3576
11.0
RHH5262_R3634
11.7
RHH5297_R3663
9.8
Memory CD4 T-cell TFH nTPM: 13.0
Samples: 4
Max nTPM: 16.2
Min nTPM: 8.7
RHH5300_R3666
14.4
RHH5236_R3608
12.7
RHH5265_R3637
8.7
RHH5208_R3579
16.2
Memory CD4 T-cell Th1 nTPM: 9.7
Samples: 4
Max nTPM: 12.5
Min nTPM: 7.5
RHH5210_R3581
10.5
RHH5302_R3668
12.5
RHH5238_R3610
7.5
RHH5267_R3639
8.1
Memory CD4 T-cell Th1/Th17 nTPM: 10.2
Samples: 4
Max nTPM: 16.2
Min nTPM: 5.7
RHH5303_R3669
16.2
RHH5211_R3582
8.3
RHH5239_R3611
10.4
RHH5268_R3640
5.7
Memory CD4 T-cell Th17 nTPM: 9.7
Samples: 4
Max nTPM: 16.6
Min nTPM: 6.0
RHH5304_R3670
16.6
RHH5212_R3583
6.6
RHH5240_R3612
9.5
RHH5269_R3641
6.0
Memory CD4 T-cell Th2 nTPM: 10.7
Samples: 4
Max nTPM: 15.0
Min nTPM: 5.9
RHH5305_R3671
11.8
RHH5213_R3584
10.2
RHH5241_R3613
15.0
RHH5270_R3642
5.9
Naive CD4 T-cell nTPM: 11.3
Samples: 4
Max nTPM: 15.5
Min nTPM: 8.6
RHH5306_R3672
10.8
RHH5214_R3585
10.3
RHH5242_R3614
15.5
RHH5271_R3643
8.6
Naive CD8 T-cell nTPM: 13.2
Samples: 4
Max nTPM: 24.3
Min nTPM: 7.8
RHH5201_R3572
24.3
RHH5229_R3601
7.8
RHH5258_R3630
8.7
RHH5287_R3659
12.0
Non-Vd2 gdTCR nTPM: 6.0
Samples: 4
Max nTPM: 6.9
Min nTPM: 4.3
RHH5235_R3607
4.3
RHH5264_R3636
6.9
RHH5207_R3578
6.7
RHH5299_R3665
6.1
T-reg nTPM: 9.3
Samples: 4
Max nTPM: 12.1
Min nTPM: 7.4
RHH5301_R3667
7.4
RHH5237_R3609
12.1
RHH5266_R3638
9.6
RHH5209_R3580
8.0
Terminal effector memory CD4 T-cell nTPM: 7.4
Samples: 2
Max nTPM: 8.8
Min nTPM: 6.0
RHH5243_R3615
6.0
RHH5272_R3644
8.8
Terminal effector memory CD8 T-cell nTPM: 6.8
Samples: 4
Max nTPM: 10.0
Min nTPM: 3.1
RHH5232_R3604
9.0
RHH5204_R3575
5.1
RHH5261_R3633
3.1
RHH5296_R3662
10.0
Vd2 gdTCR nTPM: 8.5
Samples: 4
Max nTPM: 9.9
Min nTPM: 6.9
RHH5234_R3606
9.9
RHH5206_R3577
7.3
RHH5263_R3635
6.9
RHH5298_R3664
9.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
