MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.1 nTPM
HPA Brain:60.3 nTPM
GTEx:32.1 nTPM
FANTOM5:69.4 Scaled Tags Per Million
Pig:16.4 nTPM
Mouse:19.1 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.7
2586 Male, age 75, left hemisphere 88.1
2666 Male, age 74, left hemisphere 68.8
2411 Female, age 72, unknown 54.6
1830 Male, age 51, unknown 52.4
2828 Female, age 72, unknown 52.3
1833 Male, age 53, unknown 52.1
2019 Male, age 18, unknown 49.8
1870 Female, age 42, unknown 49.4
1827 Male, age 72, unknown 48.2
2219 Male, age 76, both hemispheres 31.1
Dorsal raphe nucleus
nTPM: 48.7
2047 Male, age 72, unknown 56.9
2750 Male, age 76, both hemispheres 56.6
1828 Male, age 53, unknown 53.1
2298 Female, age 72, unknown 38.9
2016 Female, age 72, unknown 38.1
Inferior colliculus
nTPM: 41.8
2849 Male, age 72, unknown 43.8
1848 Female, age 42, unknown 43.4
1890 Male, age 53, unknown 41.3
2097 Female, age 72, unknown 38.8
Median raphe nucleus
nTPM: 37.2
2220 Male, age 76, midline 37.2
Periaquaductal grey, anterior
nTPM: 52.4
1947 Male, age 18, unknown 61.8
2502 Female, age 75, unknown 48.0
1795 Male, age 51, unknown 47.4
Periaquaductal grey, dorsal
nTPM: 34.4
2464 Female, age 72, unknown 39.8
1831 Male, age 72, unknown 34.3
2850 Male, age 76, both hemispheres 33.3
1840 Male, age 53, unknown 30.1
Periaquaductal grey, lateral
nTPM: 36.0
2140 Male, age 76, both hemispheres 36.6
2272 Male, age 74, both hemispheres 35.8
2053 Male, age 18, unknown 35.6
Pretectal area
nTPM: 40.3
2007 Male, age 72, unknown 50.0
2316 Male, age 76, right hemisphere 49.7
1817 Female, age 42, unknown 47.6
2825 Male, age 18, unknown 43.4
1815 Male, age 53, unknown 43.3
2407 Male, age 75, both hemispheres 39.9
2667 Female, age 75, unknown 39.2
1816 Male, age 51, unknown 36.1
2224 Female, age 72, unknown 34.4
1944 Female, age 72, unknown 32.2
2273 Male, age 74, both hemispheres 27.6
Red nucleus
nTPM: 60.3
2823 Male, age 76, right hemisphere 70.3
2584 Male, age 75, left hemisphere 69.0
1821 Female, age 72, unknown 63.7
2588 Male, age 74, left hemisphere 61.9
1954 Female, age 42, unknown 59.9
2785 Male, age 18, unknown 59.9
1904 Male, age 53, unknown 59.5
2227 Male, age 72, unknown 58.2
2769 Male, age 72, unknown 57.5
1865 Male, age 51, unknown 55.4
2503 Female, age 72, unknown 55.2
2725 Female, age 75, unknown 53.7
Substantia nigra
nTPM: 46.6
1916 Female, age 42, unknown 56.2
2583 Male, age 75, right hemisphere 53.7
1941 Male, age 53, unknown 51.2
1851 Male, age 51, unknown 50.0
1889 Female, age 72, unknown 46.0
2665 Male, age 74, both hemispheres 45.8
2241 Male, age 72, unknown 42.2
2590 Female, age 75, unknown 41.8
2699 Male, age 18, unknown 40.4
2409 Female, age 72, unknown 38.9
Superior colliculus
nTPM: 42.7
2668 Female, age 75, unknown 57.3
1839 Male, age 51, unknown 49.8
1895 Male, age 76, right hemisphere 48.3
1796 Male, age 53, unknown 44.3
2587 Male, age 74, left hemisphere 42.7
2664 Male, age 75, both hemispheres 42.5
2261 Male, age 18, unknown 40.1
1913 Female, age 42, unknown 35.5
1995 Male, age 72, unknown 35.0
2087 Female, age 72, unknown 31.7
Ventral tegmental area
nTPM: 46.2
2410 Female, age 72, unknown 52.8
1915 Female, age 42, unknown 49.1
1942 Male, age 51, unknown 47.7
2218 Male, age 76, both hemispheres 45.6
2223 Female, age 72, unknown 43.3
2021 Male, age 53, unknown 38.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 32.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.1
Samples: 183

Max nTPM: 104.5
Min nTPM: 10.6
Std nTPM: 15.8
Median nTPM: 27.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 104.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 96.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 90.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 83.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 82.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 75.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 69.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 67.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 66.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 65.5
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 60.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.4
FF:10158-103A5 76 years, female 69.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.0
Samples: 4

Max nTPM: 21.6
Min nTPM: 12.4
Sample A Female 21.6
Sample B Female 12.4
Sample C Male 14.8
Sample D Male 15.3
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 17.8
Min nTPM: 11.4
Sample A Female 17.8
Sample B Female 14.8
Sample C Male 11.4
Sample D Male 14.1
Periaqueductal gray
nTPM: 14.0
Samples: 3

Max nTPM: 15.8
Min nTPM: 12.5
Sample B Female 15.8
Sample C Male 13.7
Sample D Male 12.5
Superior colliculi
nTPM: 16.4
Samples: 4

Max nTPM: 21.9
Min nTPM: 12.5
Sample A Female 21.9
Sample B Female 12.5
Sample C Male 15.4
Sample D Male 15.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 19.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 20.7
Min nTPM: 17.8
Sample A Male 18.9
Sample B Male 19.1
Sample C Female 17.8
Sample D Female 20.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
641525 Antisense, RP_040914_01_E02, Mouse strain C57BL/6J (56 days, male) 0.7

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