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TISSUE RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:244.8 nTPM
GTEx:244.8 nTPM
FANTOM5:17.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

244.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 244.8
Samples: 105

Max nTPM: 443.1
Min nTPM: 105.6
Std nTPM: 71.3
Median nTPM:
415_1 77 years, female 443.1
466_1 57 years, female 441.9
217_1 76 years, male 389.5
246_1 77 years, male 388.0
414_1 84 years, female 379.3
490_1 67 years, female 379.0
32_1 67 years, male 375.1
162_1 79 years, female 371.9
149_1 88 years, male 370.2
126_1 63 years, male 363.8
526_1 61 years, male 354.9
468_1 89 years, male 345.3
389_1 86 years, female 335.1
266_1 85 years, male 332.1
499_1 55 years, female 331.3
265_1 87 years, male 325.6
142_1 61 years, female 322.9
153_1 70 years, female 320.2
81_1 67 years, male 319.3
229_1 69 years, female 307.1
43_1 64 years, female 302.0
324_1 76 years, male 292.3
413_1 59 years, female 289.7
9_1 66 years, female 286.0
89_1 63 years, male 280.4
495_1 57 years, female 275.5
189_1 76 years, male 274.6
425_1 59 years, female 273.1
518_1 75 years, female 272.6
172_1 72 years, female 272.1
18_1 88 years, male 271.9
315_1 62 years, female 271.2
117_1 61 years, male 265.9
35_1 74 years, female 265.7
251_1 78 years, male 265.2
377_1 82 years, female 263.1
394_1 75 years, female 262.3
491_1 89 years, female 261.6
254_1 77 years, female 260.9
355_1 70 years, female 260.6
115_1 83 years, male 259.6
405_1 91 years, male 259.1
307_1 66 years, female 252.4
352_1 62 years, male 251.3
313_1 79 years, female 249.6
6_1 73 years, female 245.3
375_1 74 years, female 244.7
321_1 62 years, female 241.7
319_1 81 years, male 241.2
376_1 75 years, female 240.4
480_1 63 years, male 239.4
404_1 82 years, female 238.6
384_1 83 years, male 237.9
503_1 68 years, male 234.3
237_1 82 years, male 233.1
291_1 76 years, male 231.2
335_1 73 years, female 230.9
447_1 81 years, male 228.1
292_1 71 years, male 227.7
517_1 88 years, male 227.5
137_1 83 years, male 227.2
386_1 76 years, male 226.6
286_1 68 years, female 226.1
17_1 71 years, male 225.9
311_1 78 years, male 223.5
139_1 64 years, female 221.3
120_1 70 years, female 220.6
396_1 62 years, male 219.6
348_1 84 years, male 216.2
243_1 75 years, male 211.3
42_1 85 years, male 210.6
109_1 81 years, female 209.8
288_1 66 years, female 208.4
2_1 77 years, female 206.1
293_1 68 years, female 202.7
347_1 72 years, male 202.7
145_1 84 years, male 200.8
406_1 79 years, male 200.2
350_1 84 years, female 198.8
119_1 70 years, female 196.9
354_1 81 years, female 195.9
163_1 78 years, male 190.8
356_1 87 years, female 190.0
318_1 68 years, male 188.7
320_1 89 years, female 185.9
349_1 83 years, male 185.2
379_1 60 years, male 182.1
177_1 74 years, male 175.5
99_1 64 years, male 167.9
501_1 88 years, male 167.9
316_1 62 years, male 167.7
264_1 73 years, female 163.1
4_1 88 years, female 161.5
308_1 70 years, female 158.0
353_1 82 years, female 154.9
173_1 67 years, male 146.6
314_1 67 years, male 144.3
218_1 71 years, female 144.0
322_1 76 years, male 141.6
317_1 60 years, male 140.9
351_1 91 years, male 139.1
295_1 61 years, female 134.8
41_1 94 years, female 126.3
506_1 65 years, male 115.9
452_1 88 years, female 105.6
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 17.9
FF:10030-101E3 24-65 years, mixed 17.9

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