MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:118522.3 nTPM
HPA Brain:63565.7 nTPM
GTEx:118522.3 nTPM
Pig:72640.2 nTPM
Mouse:30855.4 nTPM
Allen mouse:22.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 63565.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51125.8
2586 Male, age 75, left hemisphere 83284.1
2219 Male, age 76, both hemispheres 75970.7
2828 Female, age 72, unknown 63049.2
2666 Male, age 74, left hemisphere 59439.7
1833 Male, age 53, unknown 49226.7
1870 Female, age 42, unknown 45949.4
1830 Male, age 51, unknown 43631.8
2019 Male, age 18, unknown 37170.4
1827 Male, age 72, unknown 32276.6
2411 Female, age 72, unknown 21259.0
Dorsal raphe nucleus
nTPM: 31743.3
1828 Male, age 53, unknown 48161.9
2047 Male, age 72, unknown 36490.9
2750 Male, age 76, both hemispheres 32468.4
2016 Female, age 72, unknown 28078.3
2298 Female, age 72, unknown 13516.8
Inferior colliculus
nTPM: 42467.5
2849 Male, age 72, unknown 63355.6
1890 Male, age 53, unknown 47636.4
1848 Female, age 42, unknown 37779.9
2097 Female, age 72, unknown 21098.1
Median raphe nucleus
nTPM: 63565.7
2220 Male, age 76, midline 63565.7
Periaquaductal grey, anterior
nTPM: 31471.1
2502 Female, age 75, unknown 38757.4
1795 Male, age 51, unknown 28744.0
1947 Male, age 18, unknown 26912.0
Periaquaductal grey, dorsal
nTPM: 37588.5
2850 Male, age 76, both hemispheres 61152.4
1831 Male, age 72, unknown 35069.0
2464 Female, age 72, unknown 28569.3
1840 Male, age 53, unknown 25563.4
Periaquaductal grey, lateral
nTPM: 26670.8
2140 Male, age 76, both hemispheres 31221.0
2053 Male, age 18, unknown 30485.5
2272 Male, age 74, both hemispheres 18305.8
Pretectal area
nTPM: 44870.3
1944 Female, age 72, unknown 68884.1
1817 Female, age 42, unknown 68188.1
1816 Male, age 51, unknown 66715.9
2667 Female, age 75, unknown 63822.5
1815 Male, age 53, unknown 54173.6
2007 Male, age 72, unknown 53883.8
2825 Male, age 18, unknown 37246.1
2407 Male, age 75, both hemispheres 27859.1
2224 Female, age 72, unknown 20967.5
2316 Male, age 76, right hemisphere 16351.1
2273 Male, age 74, both hemispheres 15481.4
Red nucleus
nTPM: 49817.5
2588 Male, age 74, left hemisphere 64203.7
2503 Female, age 72, unknown 60332.7
2584 Male, age 75, left hemisphere 56564.5
1954 Female, age 42, unknown 54095.4
2823 Male, age 76, right hemisphere 53670.9
2785 Male, age 18, unknown 53502.4
1865 Male, age 51, unknown 51880.5
2227 Male, age 72, unknown 44092.8
2769 Male, age 72, unknown 42770.7
1904 Male, age 53, unknown 42425.3
1821 Female, age 72, unknown 37215.7
2725 Female, age 75, unknown 37055.9
Substantia nigra
nTPM: 58483.2
2665 Male, age 74, both hemispheres 135108.2
2699 Male, age 18, unknown 78469.9
1916 Female, age 42, unknown 70834.2
1889 Female, age 72, unknown 54686.8
1941 Male, age 53, unknown 48358.6
2583 Male, age 75, right hemisphere 45013.8
2241 Male, age 72, unknown 43586.6
1851 Male, age 51, unknown 38215.1
2409 Female, age 72, unknown 35842.7
2590 Female, age 75, unknown 34716.2
Superior colliculus
nTPM: 40551.0
2664 Male, age 75, both hemispheres 62496.8
2087 Female, age 72, unknown 52938.7
2587 Male, age 74, left hemisphere 44506.0
1913 Female, age 42, unknown 40695.7
2668 Female, age 75, unknown 39428.9
1839 Male, age 51, unknown 34635.5
1895 Male, age 76, right hemisphere 33326.2
1995 Male, age 72, unknown 33241.4
2261 Male, age 18, unknown 32466.5
1796 Male, age 53, unknown 31774.4
Ventral tegmental area
nTPM: 43764.4
2218 Male, age 76, both hemispheres 66433.6
2223 Female, age 72, unknown 47578.8
1942 Male, age 51, unknown 44083.1
1915 Female, age 42, unknown 39223.6
2021 Male, age 53, unknown 32662.3
2410 Female, age 72, unknown 32604.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 118522.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 118522.3
Samples: 183

Max nTPM: 410833.3
Min nTPM: 8787.2
Std nTPM: 72874.4
Median nTPM: 97782.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 410833.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 402596.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 373517.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 331657.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 326421.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 294753.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 267923.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 267330.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 267226.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 255659.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 252776.6
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MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 72640.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60408.3
Samples: 4

Max nTPM: 83910.5
Min nTPM: 39912.2
Sample A Female 83910.5
Sample B Female 51138.7
Sample C Male 66671.9
Sample D Male 39912.2
Midbrain
nTPM: 72640.2
Samples: 4

Max nTPM: 92242.3
Min nTPM: 54868.3
Sample A Female 54868.3
Sample B Female 92242.3
Sample C Male 83541.7
Sample D Male 59908.6
Periaqueductal gray
nTPM: 50693.3
Samples: 3

Max nTPM: 54379.4
Min nTPM: 43935.5
Sample B Female 53765.0
Sample C Male 54379.4
Sample D Male 43935.5
Superior colliculi
nTPM: 66114.8
Samples: 4

Max nTPM: 89441.3
Min nTPM: 26661.9
Sample A Female 77701.0
Sample B Female 26661.9
Sample C Male 89441.3
Sample D Male 70655.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 30855.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 30855.4
Samples: 4

Max nTPM: 31951.9
Min nTPM: 29764.3
Sample A Male 31951.9
Sample B Male 30100.1
Sample C Female 31605.3
Sample D Female 29764.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 22.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.1
74357773 Antisense, RP_051219_04_A07, Mouse strain C57BL/6J (56 days, male) 22.1

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