MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42601.4 nTPM
HPA Brain:25439.1 nTPM
GTEx:42601.4 nTPM
Pig:9712.7 nTPM
Mouse:13467.8 nTPM
Allen mouse:23.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 25439.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21094.9
2586 Male, age 75, left hemisphere 35658.1
2219 Male, age 76, both hemispheres 33305.5
2666 Male, age 74, left hemisphere 25846.4
2828 Female, age 72, unknown 23499.4
1833 Male, age 53, unknown 19009.6
1870 Female, age 42, unknown 18243.7
1830 Male, age 51, unknown 17306.0
2019 Male, age 18, unknown 16073.7
1827 Male, age 72, unknown 13071.0
2411 Female, age 72, unknown 8935.7
Dorsal raphe nucleus
nTPM: 12603.1
1828 Male, age 53, unknown 18619.5
2047 Male, age 72, unknown 14263.5
2750 Male, age 76, both hemispheres 13378.1
2016 Female, age 72, unknown 11198.5
2298 Female, age 72, unknown 5556.1
Inferior colliculus
nTPM: 17661.4
2849 Male, age 72, unknown 28422.8
1890 Male, age 53, unknown 19045.4
1848 Female, age 42, unknown 15500.7
2097 Female, age 72, unknown 7676.9
Median raphe nucleus
nTPM: 24509.0
2220 Male, age 76, midline 24509.0
Periaquaductal grey, anterior
nTPM: 12442.5
2502 Female, age 75, unknown 14882.8
1795 Male, age 51, unknown 12356.9
1947 Male, age 18, unknown 10087.7
Periaquaductal grey, dorsal
nTPM: 16935.7
2850 Male, age 76, both hemispheres 27310.0
1831 Male, age 72, unknown 13972.8
2464 Female, age 72, unknown 13269.5
1840 Male, age 53, unknown 13190.5
Periaquaductal grey, lateral
nTPM: 10072.3
2140 Male, age 76, both hemispheres 12794.7
2053 Male, age 18, unknown 11071.9
2272 Male, age 74, both hemispheres 6350.3
Pretectal area
nTPM: 16738.7
1817 Female, age 42, unknown 24641.4
1944 Female, age 72, unknown 23007.7
1816 Male, age 51, unknown 22091.7
2667 Female, age 75, unknown 21881.0
1815 Male, age 53, unknown 20848.5
2007 Male, age 72, unknown 20615.0
2825 Male, age 18, unknown 15994.9
2407 Male, age 75, both hemispheres 12751.3
2224 Female, age 72, unknown 8457.6
2316 Male, age 76, right hemisphere 8214.2
2273 Male, age 74, both hemispheres 5622.7
Red nucleus
nTPM: 18348.9
2584 Male, age 75, left hemisphere 25156.8
2588 Male, age 74, left hemisphere 22881.2
2503 Female, age 72, unknown 20909.2
2785 Male, age 18, unknown 20115.3
1865 Male, age 51, unknown 19180.9
1954 Female, age 42, unknown 19091.2
2823 Male, age 76, right hemisphere 17368.1
2227 Male, age 72, unknown 16327.1
2769 Male, age 72, unknown 15977.3
1904 Male, age 53, unknown 15752.2
2725 Female, age 75, unknown 13824.6
1821 Female, age 72, unknown 13602.8
Substantia nigra
nTPM: 25439.1
2665 Male, age 74, both hemispheres 63370.7
2699 Male, age 18, unknown 31934.4
1916 Female, age 42, unknown 27264.2
2241 Male, age 72, unknown 21137.2
1941 Male, age 53, unknown 20851.8
1889 Female, age 72, unknown 20144.5
2583 Male, age 75, right hemisphere 20022.3
1851 Male, age 51, unknown 18704.8
2409 Female, age 72, unknown 16072.2
2590 Female, age 75, unknown 14888.8
Superior colliculus
nTPM: 16437.4
2664 Male, age 75, both hemispheres 28973.4
2087 Female, age 72, unknown 19682.9
2668 Female, age 75, unknown 18324.5
2587 Male, age 74, left hemisphere 18040.3
1895 Male, age 76, right hemisphere 14373.1
1839 Male, age 51, unknown 13728.3
1913 Female, age 42, unknown 13693.1
1995 Male, age 72, unknown 12569.9
2261 Male, age 18, unknown 12562.5
1796 Male, age 53, unknown 12426.1
Ventral tegmental area
nTPM: 18089.8
2218 Male, age 76, both hemispheres 25560.9
2223 Female, age 72, unknown 19439.6
1942 Male, age 51, unknown 18282.3
1915 Female, age 42, unknown 16091.0
2410 Female, age 72, unknown 15431.2
2021 Male, age 53, unknown 13733.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42601.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42601.4
Samples: 183

Max nTPM: 163670.0
Min nTPM: 1516.5
Std nTPM: 29145.4
Median nTPM: 32947.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 163670.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 163093.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 149155.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 122652.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 118036.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 117829.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 110313.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 106984.6
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 105789.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 104248.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 101297.3
Show allShow less

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9712.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8311.6
Samples: 4

Max nTPM: 10996.4
Min nTPM: 5014.6
Sample A Female 10996.4
Sample B Female 7662.9
Sample C Male 9572.3
Sample D Male 5014.6
Midbrain
nTPM: 9712.7
Samples: 4

Max nTPM: 13952.3
Min nTPM: 6686.4
Sample A Female 7836.5
Sample B Female 13952.3
Sample C Male 10375.5
Sample D Male 6686.4
Periaqueductal gray
nTPM: 8179.7
Samples: 3

Max nTPM: 9335.1
Min nTPM: 6235.7
Sample B Female 9335.1
Sample C Male 8968.3
Sample D Male 6235.7
Superior colliculi
nTPM: 8015.0
Samples: 4

Max nTPM: 10069.4
Min nTPM: 3378.9
Sample A Female 9665.0
Sample B Female 3378.9
Sample C Male 10069.4
Sample D Male 8946.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13467.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13467.8
Samples: 4

Max nTPM: 14214.2
Min nTPM: 12873.5
Sample A Male 14214.2
Sample B Male 13358.2
Sample C Female 13425.2
Sample D Female 12873.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 23.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 23.7
74357767 Antisense, RP_051219_04_A06, Mouse strain C57BL/6J (56 days, male) 24.9
81600594 Antisense, RP_090205_01_D02, Mouse strain C57BL/6J (56 days, male) 22.5

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo