MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA Brain:116.2 nTPM
GTEx:40.2 nTPM
FANTOM5:99.3 Scaled Tags Per Million
Pig:44.9 nTPM
Mouse:28.1 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 116.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.3
2586 Male, age 75, left hemisphere 140.9
2828 Female, age 72, unknown 109.5
2019 Male, age 18, unknown 109.2
1830 Male, age 51, unknown 109.0
2666 Male, age 74, left hemisphere 106.1
1833 Male, age 53, unknown 105.5
2411 Female, age 72, unknown 104.7
1870 Female, age 42, unknown 103.4
2219 Male, age 76, both hemispheres 92.9
1827 Male, age 72, unknown 91.8
Dorsal raphe nucleus
nTPM: 93.2
2750 Male, age 76, both hemispheres 129.5
1828 Male, age 53, unknown 94.9
2047 Male, age 72, unknown 92.7
2298 Female, age 72, unknown 76.9
2016 Female, age 72, unknown 71.9
Inferior colliculus
nTPM: 86.7
1848 Female, age 42, unknown 90.8
1890 Male, age 53, unknown 88.0
2849 Male, age 72, unknown 84.3
2097 Female, age 72, unknown 83.4
Median raphe nucleus
nTPM: 108.3
2220 Male, age 76, midline 108.3
Periaquaductal grey, anterior
nTPM: 101.8
2502 Female, age 75, unknown 107.3
1947 Male, age 18, unknown 103.9
1795 Male, age 51, unknown 94.2
Periaquaductal grey, dorsal
nTPM: 70.8
1831 Male, age 72, unknown 81.7
2464 Female, age 72, unknown 78.1
1840 Male, age 53, unknown 67.3
2850 Male, age 76, both hemispheres 55.9
Periaquaductal grey, lateral
nTPM: 69.9
2053 Male, age 18, unknown 81.5
2272 Male, age 74, both hemispheres 69.5
2140 Male, age 76, both hemispheres 58.5
Pretectal area
nTPM: 97.2
1817 Female, age 42, unknown 116.0
2007 Male, age 72, unknown 114.9
1815 Male, age 53, unknown 108.7
2407 Male, age 75, both hemispheres 107.7
1816 Male, age 51, unknown 107.4
2667 Female, age 75, unknown 99.0
1944 Female, age 72, unknown 97.4
2825 Male, age 18, unknown 91.0
2316 Male, age 76, right hemisphere 81.0
2224 Female, age 72, unknown 73.2
2273 Male, age 74, both hemispheres 73.2
Red nucleus
nTPM: 116.2
2584 Male, age 75, left hemisphere 143.2
2823 Male, age 76, right hemisphere 127.3
2227 Male, age 72, unknown 120.8
2588 Male, age 74, left hemisphere 120.4
1904 Male, age 53, unknown 120.2
1865 Male, age 51, unknown 119.8
2769 Male, age 72, unknown 117.6
1954 Female, age 42, unknown 113.8
1821 Female, age 72, unknown 110.4
2785 Male, age 18, unknown 109.6
2503 Female, age 72, unknown 101.4
2725 Female, age 75, unknown 90.3
Substantia nigra
nTPM: 97.2
2583 Male, age 75, right hemisphere 124.3
1916 Female, age 42, unknown 110.9
1889 Female, age 72, unknown 104.7
1851 Male, age 51, unknown 102.6
2665 Male, age 74, both hemispheres 97.5
1941 Male, age 53, unknown 96.3
2590 Female, age 75, unknown 88.5
2699 Male, age 18, unknown 84.2
2241 Male, age 72, unknown 81.5
2409 Female, age 72, unknown 81.3
Superior colliculus
nTPM: 99.0
2668 Female, age 75, unknown 125.9
2664 Male, age 75, both hemispheres 113.0
2261 Male, age 18, unknown 101.6
2587 Male, age 74, left hemisphere 95.4
1839 Male, age 51, unknown 94.8
2087 Female, age 72, unknown 94.3
1796 Male, age 53, unknown 93.7
1995 Male, age 72, unknown 91.8
1913 Female, age 42, unknown 90.1
1895 Male, age 76, right hemisphere 89.0
Ventral tegmental area
nTPM: 103.7
2223 Female, age 72, unknown 133.5
2410 Female, age 72, unknown 109.1
2218 Male, age 76, both hemispheres 103.6
1915 Female, age 42, unknown 93.7
1942 Male, age 51, unknown 91.1
2021 Male, age 53, unknown 91.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.2
Samples: 183

Max nTPM: 90.8
Min nTPM: 17.9
Std nTPM: 11.4
Median nTPM: 38.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 90.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 84.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 81.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 78.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 69.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 69.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 67.2
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 59.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 59.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 58.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 57.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 99.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.3
FF:10158-103A5 76 years, female 99.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.0
Samples: 4

Max nTPM: 51.8
Min nTPM: 31.1
Sample A Female 46.2
Sample B Female 31.1
Sample C Male 51.8
Sample D Male 38.7
Midbrain
nTPM: 44.9
Samples: 4

Max nTPM: 59.4
Min nTPM: 27.2
Sample A Female 55.5
Sample B Female 27.2
Sample C Male 59.4
Sample D Male 37.3
Periaqueductal gray
nTPM: 27.2
Samples: 3

Max nTPM: 31.7
Min nTPM: 23.1
Sample B Female 23.1
Sample C Male 31.7
Sample D Male 26.7
Superior colliculi
nTPM: 43.7
Samples: 4

Max nTPM: 51.1
Min nTPM: 36.8
Sample A Female 42.9
Sample B Female 36.8
Sample C Male 51.1
Sample D Male 43.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.1
Samples: 4

Max nTPM: 30.8
Min nTPM: 27.1
Sample A Male 27.1
Sample B Male 27.5
Sample C Female 30.8
Sample D Female 27.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68745534 Antisense, RP_050210_02_B05, Mouse strain C57BL/6J (56 days, male) 3.6

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