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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • SCAMP5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:85.7 nTPM
FANTOM5:160.6 Scaled Tags Per Million
Pig:89.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA046645
Glial cells Not detected
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 85.7
Samples: 300

Max nTPM: 221.3
Min nTPM: 11.6
Std nTPM: 35.2
Median nTPM: 83.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 221.3
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 171.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 168.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 158.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 157.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 153.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 152.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 150.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 150.2
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 149.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 147.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 147.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 146.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 146.6
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 146.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 145.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 145.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 144.9
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 144.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 143.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 143.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 142.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 141.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 141.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 140.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 140.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 139.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 138.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 137.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 136.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 136.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 136.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 136.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 136.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 135.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 135.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 134.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 133.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 131.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 130.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 130.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 128.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 127.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 127.7
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 126.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 125.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 123.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 122.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 122.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 122.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 121.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 120.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 120.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 120.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 119.8
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 119.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 119.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 119.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 118.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 116.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 116.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 116.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 115.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 115.5
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 115.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 114.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 113.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 113.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 113.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 112.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 111.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 111.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 111.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 110.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 110.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 110.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 110.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 110.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 110.1
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 109.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 109.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 109.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 109.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 109.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 109.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 108.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 108.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 107.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 107.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 105.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 104.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 104.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 103.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 103.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 103.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 102.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 101.8
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 101.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 101.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 101.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 100.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 100.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 100.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 100.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 100.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 100.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 99.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 97.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 97.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 97.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 97.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 97.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 97.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 97.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 96.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 95.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 95.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 95.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 95.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 93.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 93.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 93.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 93.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 92.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 92.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 91.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 91.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 90.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 90.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 89.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 89.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 88.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 88.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 88.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 88.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 88.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 87.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 87.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 86.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 86.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 86.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 86.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 85.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 85.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 85.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 85.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 85.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 85.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 84.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 84.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 83.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 83.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 83.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 82.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 82.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 82.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 80.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 79.9
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 78.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 78.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 78.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 77.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 77.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 76.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 76.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 76.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 76.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 76.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 75.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 75.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 74.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 74.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 74.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 73.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 73.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 73.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 73.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 73.5
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 73.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 73.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 72.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 71.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 71.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 71.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 70.9
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 70.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 70.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 70.2
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 70.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 69.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 69.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 68.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 68.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 68.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 68.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 67.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 66.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 66.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 66.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 66.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 65.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 65.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 64.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 63.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 62.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 61.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 61.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 60.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 60.0
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 59.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 59.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 59.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 59.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 59.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 58.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 58.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 58.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 57.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 57.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 57.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 57.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 56.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 56.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 56.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 56.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 56.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 55.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 54.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 54.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 54.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 54.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 54.3
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 53.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 53.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 52.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 52.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 52.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 51.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 51.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 50.8
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 50.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 49.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 49.8
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 49.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 49.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 49.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 49.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 49.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 49.2
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 49.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 48.6
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 48.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 48.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 48.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 47.9
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 47.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 47.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 46.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 46.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 45.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 45.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 43.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 43.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 43.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 42.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 42.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 42.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 42.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 41.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 41.6
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 41.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 41.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 41.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 41.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 41.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 41.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 40.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 40.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 40.3
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 40.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 39.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 39.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 39.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 38.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 37.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 37.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 37.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 37.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 35.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 34.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 33.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 31.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 31.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 30.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 29.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 28.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 26.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 23.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 21.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 11.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

160.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 160.6
FF:10164-103B2 76 years, female 160.6

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.4
Pig sample Sample description nTPM
Caudate
nTPM: 89.4
Samples: 4

Max nTPM: 106.0
Min nTPM: 74.2
Sample A Female 74.2
Sample B Female 95.8
Sample C Male 106.0
Sample D Male 81.4

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