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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:263.3 nTPM
GTEx:263.3 nTPM
FANTOM5:115.4 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 263.3
Samples: 105

Max nTPM: 485.9
Min nTPM: 92.9
Std nTPM: 80.8
Median nTPM:
218_1 71 years, female 485.9
352_1 62 years, male 454.5
319_1 81 years, male 424.3
321_1 62 years, female 413.4
286_1 68 years, female 404.3
350_1 84 years, female 398.6
322_1 76 years, male 389.4
320_1 89 years, female 388.5
229_1 69 years, female 379.4
376_1 75 years, female 372.3
386_1 76 years, male 360.2
172_1 72 years, female 356.8
394_1 75 years, female 351.9
316_1 62 years, male 349.6
293_1 68 years, female 349.2
292_1 71 years, male 347.6
163_1 78 years, male 346.2
354_1 81 years, female 343.1
335_1 73 years, female 338.7
237_1 82 years, male 338.5
389_1 86 years, female 337.9
6_1 73 years, female 335.6
405_1 91 years, male 332.6
375_1 74 years, female 329.6
355_1 70 years, female 328.1
353_1 82 years, female 321.8
425_1 59 years, female 318.6
318_1 68 years, male 314.8
243_1 75 years, male 312.9
377_1 82 years, female 312.3
406_1 79 years, male 309.9
356_1 87 years, female 307.2
526_1 61 years, male 305.9
217_1 76 years, male 304.6
447_1 81 years, male 303.8
349_1 83 years, male 302.6
379_1 60 years, male 300.1
266_1 85 years, male 299.2
251_1 78 years, male 296.0
35_1 74 years, female 293.5
246_1 77 years, male 292.4
480_1 63 years, male 289.5
2_1 77 years, female 284.9
517_1 88 years, male 281.7
177_1 74 years, male 275.9
317_1 60 years, male 271.0
518_1 75 years, female 269.2
384_1 83 years, male 268.2
347_1 72 years, male 267.2
348_1 84 years, male 265.9
396_1 62 years, male 265.6
189_1 76 years, male 262.2
291_1 76 years, male 261.0
404_1 82 years, female 259.2
153_1 70 years, female 258.1
311_1 78 years, male 257.9
503_1 68 years, male 256.1
499_1 55 years, female 256.0
324_1 76 years, male 252.0
265_1 87 years, male 247.1
506_1 65 years, male 243.2
307_1 66 years, female 241.8
351_1 91 years, male 238.4
173_1 67 years, male 233.8
295_1 61 years, female 232.5
17_1 71 years, male 230.2
145_1 84 years, male 229.7
115_1 83 years, male 229.6
99_1 64 years, male 227.7
137_1 83 years, male 226.1
9_1 66 years, female 226.0
452_1 88 years, female 222.2
264_1 73 years, female 219.0
313_1 79 years, female 219.0
468_1 89 years, male 217.3
142_1 61 years, female 206.7
18_1 88 years, male 203.2
139_1 64 years, female 203.1
81_1 67 years, male 201.4
4_1 88 years, female 199.4
126_1 63 years, male 198.7
288_1 66 years, female 194.6
254_1 77 years, female 194.2
415_1 77 years, female 192.8
495_1 57 years, female 186.8
43_1 64 years, female 186.3
120_1 70 years, female 185.5
117_1 61 years, male 184.7
315_1 62 years, female 183.7
162_1 79 years, female 178.1
109_1 81 years, female 176.9
42_1 85 years, male 173.1
41_1 94 years, female 172.1
32_1 67 years, male 161.0
314_1 67 years, male 155.2
414_1 84 years, female 153.5
119_1 70 years, female 147.9
89_1 63 years, male 139.4
466_1 57 years, female 137.3
413_1 59 years, female 127.8
490_1 67 years, female 127.0
308_1 70 years, female 123.4
149_1 88 years, male 114.7
501_1 88 years, male 108.1
491_1 89 years, female 92.9
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RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

115.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 115.4
FF:10030-101E3 24-65 years, mixed 115.4

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