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  • HMGN2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:214.5 nTPM
HPA Brain:119.8 nTPM
GTEx:214.5 nTPM
FANTOM5:41.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.8
Sample id Sample description nTPM
Amygdala
nTPM: 119.8
2514 Male, age 75, right hemisphere 141.4
2695 Female, age 67, right hemisphere 121.8
1987 Female, age 91, left hemisphere 116.8
2814 Male, age 76, right hemisphere 115.3
2517 Female, age 94, left hemisphere 103.4
Basal amygdala
nTPM: 90.2
2609 Male, age 75, right hemisphere 105.6
1955 Male, age 76, both hemispheres 99.4
2110 Male, age 80, left hemisphere 89.8
2827 Female, age 67, right hemisphere 86.8
2685 Female, age 94, left hemisphere 85.9
2243 Female, age 91, right hemisphere 73.9
Central amygdala
nTPM: 103.8
2826 Female, age 94, left hemisphere 121.6
2515 Male, age 75, right hemisphere 110.8
1905 Male, age 76, both hemispheres 107.9
2701 Female, age 91, right hemisphere 95.0
2239 Male, age 80, left hemisphere 83.5
Corticomedial amygdala
nTPM: 91.8
2428 Male, age 75, right hemisphere 132.3
2240 Male, age 76, both hemispheres 97.2
2429 Female, age 94, left hemisphere 90.0
2829 Male, age 80, left hemisphere 84.2
2242 Female, age 91, right hemisphere 77.8
2535 Female, age 67, right hemisphere 69.3
Lateral amygdala
nTPM: 99.9
2516 Male, age 75, right hemisphere 115.0
2830 Female, age 67, right hemisphere 109.7
1883 Male, age 76, both hemispheres 107.2
2534 Female, age 94, left hemisphere 95.2
2256 Male, age 80, left hemisphere 87.8
2255 Female, age 91, right hemisphere 84.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 214.5
Samples: 181

Max nTPM: 478.7
Min nTPM: 104.1
Std nTPM: 61.4
Median nTPM: 204.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 478.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 431.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 416.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 407.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 383.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 370.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 361.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 354.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 342.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 320.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 311.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 309.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 305.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 304.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 293.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 293.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 288.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 286.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 285.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 285.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 282.7
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 279.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 278.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 277.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 272.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 271.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 270.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 269.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 266.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 264.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 262.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 261.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 261.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 258.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 258.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 256.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 255.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 253.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 253.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 253.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 252.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 249.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 246.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 244.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 243.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 241.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 241.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 240.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 240.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 239.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 234.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 233.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 233.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 232.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 231.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 231.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 231.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 229.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 228.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 226.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 225.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 224.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 224.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 223.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 223.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 220.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 220.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 220.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 219.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 219.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 218.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 217.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 217.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 215.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 215.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 214.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 214.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 211.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 211.3
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 211.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 211.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 209.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 209.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 209.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 208.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 206.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 206.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 205.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 204.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 204.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 204.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 202.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 202.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 201.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 200.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 200.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 199.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 197.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 196.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 195.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 194.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 191.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 191.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 191.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 191.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 191.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 190.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 190.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 190.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 190.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 188.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 188.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 187.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 187.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 186.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 186.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 185.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 185.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 185.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 184.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 184.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 183.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 182.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 182.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 182.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 182.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 181.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 179.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 179.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 178.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 178.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 178.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 177.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 177.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 175.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 175.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 175.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 174.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 173.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 173.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 172.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 172.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 170.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 170.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 169.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 168.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 164.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 164.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 163.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 163.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 161.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 161.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 158.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 158.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 156.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 154.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 154.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 153.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 152.3
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 152.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 149.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 147.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 147.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 146.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 143.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 143.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 140.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 135.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 132.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 130.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 128.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 117.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 116.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 114.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 114.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 106.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 104.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 41.9
FF:10151-102I7 76 years, female 41.9

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