MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA Brain:24.5 nTPM
GTEx:17.7 nTPM
FANTOM5:120.2 Scaled Tags Per Million
Pig:36.7 nTPM
Mouse:37.9 nTPM
Allen mouse:3.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.6
1870 Female, age 42, unknown 22.7
2219 Male, age 76, both hemispheres 22.5
2019 Male, age 18, unknown 21.7
1827 Male, age 72, unknown 21.3
1830 Male, age 51, unknown 21.1
1833 Male, age 53, unknown 20.6
2586 Male, age 75, left hemisphere 20.3
2828 Female, age 72, unknown 20.1
2666 Male, age 74, left hemisphere 19.6
2411 Female, age 72, unknown 16.5
Dorsal raphe nucleus
nTPM: 18.8
1828 Male, age 53, unknown 20.1
2750 Male, age 76, both hemispheres 19.5
2016 Female, age 72, unknown 19.3
2047 Male, age 72, unknown 17.5
2298 Female, age 72, unknown 17.5
Inferior colliculus
nTPM: 23.3
2849 Male, age 72, unknown 25.0
1890 Male, age 53, unknown 23.1
1848 Female, age 42, unknown 22.7
2097 Female, age 72, unknown 22.5
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Periaquaductal grey, anterior
nTPM: 19.7
1947 Male, age 18, unknown 20.9
2502 Female, age 75, unknown 19.2
1795 Male, age 51, unknown 18.9
Periaquaductal grey, dorsal
nTPM: 22.3
2850 Male, age 76, both hemispheres 27.2
1831 Male, age 72, unknown 21.7
1840 Male, age 53, unknown 21.7
2464 Female, age 72, unknown 18.9
Periaquaductal grey, lateral
nTPM: 22.4
2140 Male, age 76, both hemispheres 24.6
2272 Male, age 74, both hemispheres 21.8
2053 Male, age 18, unknown 20.7
Pretectal area
nTPM: 23.0
1817 Female, age 42, unknown 27.1
1944 Female, age 72, unknown 25.4
1816 Male, age 51, unknown 24.9
1815 Male, age 53, unknown 23.9
2007 Male, age 72, unknown 23.5
2667 Female, age 75, unknown 22.5
2224 Female, age 72, unknown 22.2
2316 Male, age 76, right hemisphere 21.4
2407 Male, age 75, both hemispheres 21.3
2273 Male, age 74, both hemispheres 20.8
2825 Male, age 18, unknown 20.4
Red nucleus
nTPM: 23.6
2725 Female, age 75, unknown 26.4
1954 Female, age 42, unknown 26.0
1865 Male, age 51, unknown 25.1
1821 Female, age 72, unknown 25.0
2503 Female, age 72, unknown 25.0
1904 Male, age 53, unknown 23.1
2823 Male, age 76, right hemisphere 23.0
2227 Male, age 72, unknown 22.9
2769 Male, age 72, unknown 22.5
2785 Male, age 18, unknown 22.1
2588 Male, age 74, left hemisphere 21.9
2584 Male, age 75, left hemisphere 19.9
Substantia nigra
nTPM: 20.8
1889 Female, age 72, unknown 24.8
1916 Female, age 42, unknown 22.4
2665 Male, age 74, both hemispheres 22.3
2699 Male, age 18, unknown 21.8
2241 Male, age 72, unknown 20.8
2583 Male, age 75, right hemisphere 20.6
1941 Male, age 53, unknown 19.7
1851 Male, age 51, unknown 19.6
2590 Female, age 75, unknown 18.6
2409 Female, age 72, unknown 17.0
Superior colliculus
nTPM: 21.5
2261 Male, age 18, unknown 23.5
1913 Female, age 42, unknown 22.2
2668 Female, age 75, unknown 22.1
1995 Male, age 72, unknown 22.0
1796 Male, age 53, unknown 21.7
1895 Male, age 76, right hemisphere 21.7
2087 Female, age 72, unknown 21.4
2587 Male, age 74, left hemisphere 21.1
1839 Male, age 51, unknown 20.8
2664 Male, age 75, both hemispheres 18.5
Ventral tegmental area
nTPM: 19.9
2218 Male, age 76, both hemispheres 23.5
2223 Female, age 72, unknown 22.0
1915 Female, age 42, unknown 19.1
2021 Male, age 53, unknown 19.1
1942 Male, age 51, unknown 18.8
2410 Female, age 72, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.7
Samples: 183

Max nTPM: 34.6
Min nTPM: 11.9
Std nTPM: 3.1
Median nTPM: 16.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 34.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 28.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 27.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 26.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 26.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 25.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 24.7
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 23.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 23.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 22.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.2
FF:10158-103A5 76 years, female 120.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.0
Samples: 4

Max nTPM: 38.3
Min nTPM: 34.5
Sample A Female 34.5
Sample B Female 34.7
Sample C Male 36.6
Sample D Male 38.3
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 42.9
Min nTPM: 34.1
Sample A Female 42.9
Sample B Female 35.4
Sample C Male 34.5
Sample D Male 34.1
Periaqueductal gray
nTPM: 34.8
Samples: 3

Max nTPM: 36.9
Min nTPM: 32.4
Sample B Female 32.4
Sample C Male 36.9
Sample D Male 35.1
Superior colliculi
nTPM: 36.6
Samples: 4

Max nTPM: 38.6
Min nTPM: 34.8
Sample A Female 37.9
Sample B Female 35.2
Sample C Male 34.8
Sample D Male 38.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 37.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.9
Samples: 4

Max nTPM: 44.1
Min nTPM: 32.8
Sample A Male 32.8
Sample B Male 37.3
Sample C Female 44.1
Sample D Female 37.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
70191943 Antisense, RP_050512_04_H09, Mouse strain C57BL/6J (56 days, male) 4.4
74957897 Antisense, RP_060315_05_A03, Mouse strain C57BL/6J (56 days, male) 3.0

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