MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.6 nTPM
HPA Brain:136.1 nTPM
GTEx:22.6 nTPM
FANTOM5:93.6 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:14.1 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 136.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.6
2586 Male, age 75, left hemisphere 144.7
2019 Male, age 18, unknown 130.5
1833 Male, age 53, unknown 122.7
1830 Male, age 51, unknown 118.9
2411 Female, age 72, unknown 109.0
1870 Female, age 42, unknown 105.3
2828 Female, age 72, unknown 99.3
1827 Male, age 72, unknown 86.6
2666 Male, age 74, left hemisphere 85.4
2219 Male, age 76, both hemispheres 73.9
Dorsal raphe nucleus
nTPM: 98.3
2016 Female, age 72, unknown 110.4
1828 Male, age 53, unknown 107.1
2750 Male, age 76, both hemispheres 104.8
2047 Male, age 72, unknown 91.6
2298 Female, age 72, unknown 77.6
Inferior colliculus
nTPM: 101.3
1848 Female, age 42, unknown 112.2
2849 Male, age 72, unknown 106.9
1890 Male, age 53, unknown 97.7
2097 Female, age 72, unknown 88.5
Median raphe nucleus
nTPM: 94.6
2220 Male, age 76, midline 94.6
Periaquaductal grey, anterior
nTPM: 94.2
2502 Female, age 75, unknown 108.6
1947 Male, age 18, unknown 94.1
1795 Male, age 51, unknown 80.0
Periaquaductal grey, dorsal
nTPM: 103.2
2850 Male, age 76, both hemispheres 140.7
2464 Female, age 72, unknown 103.6
1840 Male, age 53, unknown 92.1
1831 Male, age 72, unknown 76.5
Periaquaductal grey, lateral
nTPM: 113.8
2140 Male, age 76, both hemispheres 175.3
2053 Male, age 18, unknown 86.4
2272 Male, age 74, both hemispheres 79.8
Pretectal area
nTPM: 93.4
2316 Male, age 76, right hemisphere 130.9
1817 Female, age 42, unknown 102.5
2273 Male, age 74, both hemispheres 99.7
1815 Male, age 53, unknown 97.2
2667 Female, age 75, unknown 96.3
2007 Male, age 72, unknown 94.1
2407 Male, age 75, both hemispheres 93.1
2825 Male, age 18, unknown 88.0
1944 Female, age 72, unknown 82.5
2224 Female, age 72, unknown 73.8
1816 Male, age 51, unknown 69.2
Red nucleus
nTPM: 136.1
1865 Male, age 51, unknown 159.7
2227 Male, age 72, unknown 159.4
1904 Male, age 53, unknown 154.9
1821 Female, age 72, unknown 154.5
1954 Female, age 42, unknown 154.2
2769 Male, age 72, unknown 152.4
2503 Female, age 72, unknown 146.3
2785 Male, age 18, unknown 130.5
2823 Male, age 76, right hemisphere 122.3
2588 Male, age 74, left hemisphere 115.6
2725 Female, age 75, unknown 96.1
2584 Male, age 75, left hemisphere 87.4
Substantia nigra
nTPM: 96.3
2409 Female, age 72, unknown 122.8
2699 Male, age 18, unknown 115.3
1851 Male, age 51, unknown 101.4
2590 Female, age 75, unknown 95.1
1889 Female, age 72, unknown 94.4
2583 Male, age 75, right hemisphere 93.4
1941 Male, age 53, unknown 93.3
2241 Male, age 72, unknown 92.1
1916 Female, age 42, unknown 91.1
2665 Male, age 74, both hemispheres 64.4
Superior colliculus
nTPM: 97.5
1913 Female, age 42, unknown 119.5
1995 Male, age 72, unknown 115.6
2668 Female, age 75, unknown 110.7
1895 Male, age 76, right hemisphere 104.3
1839 Male, age 51, unknown 99.4
2587 Male, age 74, left hemisphere 98.0
1796 Male, age 53, unknown 85.9
2261 Male, age 18, unknown 84.7
2087 Female, age 72, unknown 82.0
2664 Male, age 75, both hemispheres 75.3
Ventral tegmental area
nTPM: 95.2
2410 Female, age 72, unknown 113.8
2218 Male, age 76, both hemispheres 101.1
1942 Male, age 51, unknown 99.3
2223 Female, age 72, unknown 89.7
1915 Female, age 42, unknown 89.0
2021 Male, age 53, unknown 78.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.6
Samples: 183

Max nTPM: 47.2
Min nTPM: 8.2
Std nTPM: 6.8
Median nTPM: 21.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 43.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 42.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 38.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 37.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 36.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 35.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 35.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 35.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 35.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 34.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.6
FF:10158-103A5 76 years, female 93.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.7
Samples: 4

Max nTPM: 40.9
Min nTPM: 21.8
Sample A Female 30.8
Sample B Female 21.8
Sample C Male 25.1
Sample D Male 40.9
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 31.2
Min nTPM: 20.0
Sample A Female 22.5
Sample B Female 31.2
Sample C Male 20.0
Sample D Male 24.3
Periaqueductal gray
nTPM: 22.8
Samples: 3

Max nTPM: 28.9
Min nTPM: 18.1
Sample B Female 28.9
Sample C Male 18.1
Sample D Male 21.5
Superior colliculi
nTPM: 26.6
Samples: 4

Max nTPM: 33.2
Min nTPM: 14.4
Sample A Female 31.7
Sample B Female 14.4
Sample C Male 27.0
Sample D Male 33.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.4
Sample A Male 12.4
Sample B Male 15.3
Sample C Female 14.2
Sample D Female 14.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
69752406 Antisense, RP_050505_01_D03, Mouse strain C57BL/6J (56 days, male) 0.5

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