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  • TISSUE

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  • GDI1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:345.1 nTPM
HPA Brain:387.4 nTPM
GTEx:345.1 nTPM
FANTOM5:196.6 Scaled Tags Per Million
Pig:461.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

387.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 354.9
2565 Male, age 75, midline 390.6
1981 Female, age 72, midline 371.4
2194 Female, age 79, both hemispheres 368.5
2816 Male, age 47, midline 344.9
2048 Male, age 55, midline 299.0
Cervical spinal cord, dorsal horn
nTPM: 387.4
2296 Male, age 66, both hemispheres 479.0
2069 Male, age 47, both hemispheres 384.6
2173 Female, age 72, unknown 375.7
1877 Male, age 55, unknown 371.0
2297 Male, age 75, both hemispheres 366.3
2721 Male, age 90, both hemispheres 347.7
Cervical spinal cord, ventral horn
nTPM: 335.2
2098 Female, age 72, unknown 365.6
2820 Female, age 79, both hemispheres 363.6
2068 Male, age 55, unknown 347.0
2480 Male, age 75, both hemispheres 325.0
2295 Male, age 66, both hemispheres 306.8
2809 Male, age 90, both hemispheres 303.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

345.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 345.1
Samples: 204

Max nTPM: 559.9
Min nTPM: 202.9
Std nTPM: 58.3
Median nTPM: 348.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 559.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 483.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 474.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 473.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 461.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 455.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 454.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 451.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 450.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 449.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 444.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 443.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 442.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 441.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 441.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 436.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 428.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 427.8
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 423.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 422.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 420.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 415.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 415.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 414.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 410.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 408.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 406.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 404.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 404.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 402.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 396.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 396.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 396.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 394.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 394.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 393.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 392.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 391.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 389.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 389.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 389.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 388.4
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 385.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 385.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 385.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 384.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 384.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 383.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 380.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 380.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 378.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 377.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 376.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 375.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 375.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 374.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 374.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 374.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 372.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 371.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 371.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 371.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 370.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 368.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 368.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 368.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 367.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 367.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 367.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 366.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 365.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 364.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 364.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 363.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 363.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 363.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 361.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 361.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 361.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 361.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 360.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 360.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 359.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 358.8
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 358.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 357.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 357.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 355.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 355.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 354.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 354.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 353.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 353.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 353.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 353.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 351.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 350.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 350.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 349.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 349.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 348.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 348.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 348.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 348.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 348.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 347.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 346.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 346.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 343.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 342.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 342.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 341.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 341.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 340.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 339.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 339.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 338.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 336.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 335.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 334.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 333.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 333.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 330.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 330.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 329.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 328.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 326.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 326.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 325.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 325.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 324.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 324.0
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 323.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 322.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 322.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 320.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 319.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 317.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 317.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 317.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 317.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 316.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 316.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 316.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 315.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 314.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 311.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 309.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 309.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 308.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 307.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 307.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 307.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 306.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 306.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 305.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 305.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 304.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 303.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 302.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 301.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 301.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 300.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 300.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 299.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 299.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 297.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 297.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 296.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 296.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 293.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 292.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 291.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 289.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 285.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 283.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 281.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 277.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 275.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 275.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 275.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 273.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 273.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 272.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 268.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 266.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 266.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 264.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 257.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 257.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 250.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 248.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 248.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 242.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 238.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 236.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 235.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 230.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 229.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 227.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 217.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 209.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 206.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 202.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

196.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 196.6
FF:10181-103D1 60 years, female 197.7
FF:10159-103A6 76 years, female 195.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

461.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 422.2
Samples: 4

Max nTPM: 495.9
Min nTPM: 342.1
Sample A Female 495.9
Sample B Female 368.9
Sample C Male 342.1
Sample D Male 481.9
Ventral spinal cord
nTPM: 461.5
Samples: 4

Max nTPM: 481.2
Min nTPM: 442.2
Sample A Female 479.0
Sample B Female 443.5
Sample C Male 442.2
Sample D Male 481.2

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