MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.5 nTPM
HPA Brain:40.2 nTPM
GTEx:41.5 nTPM
FANTOM5:121.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
2586 Male, age 75, left hemisphere 38.6
2666 Male, age 74, left hemisphere 38.0
2828 Female, age 72, unknown 37.5
1870 Female, age 42, unknown 36.6
2411 Female, age 72, unknown 36.5
1833 Male, age 53, unknown 36.2
1827 Male, age 72, unknown 35.9
2219 Male, age 76, both hemispheres 33.1
1830 Male, age 51, unknown 33.0
2019 Male, age 18, unknown 27.6
Dorsal raphe nucleus
nTPM: 33.7
2750 Male, age 76, both hemispheres 37.3
2047 Male, age 72, unknown 35.9
1828 Male, age 53, unknown 33.3
2298 Female, age 72, unknown 33.2
2016 Female, age 72, unknown 28.8
Inferior colliculus
nTPM: 33.7
2849 Male, age 72, unknown 38.9
1848 Female, age 42, unknown 33.3
2097 Female, age 72, unknown 31.7
1890 Male, age 53, unknown 31.0
Median raphe nucleus
nTPM: 40.2
2220 Male, age 76, midline 40.2
Periaquaductal grey, anterior
nTPM: 34.9
2502 Female, age 75, unknown 36.4
1947 Male, age 18, unknown 35.3
1795 Male, age 51, unknown 33.0
Periaquaductal grey, dorsal
nTPM: 33.2
2464 Female, age 72, unknown 35.2
2850 Male, age 76, both hemispheres 34.6
1840 Male, age 53, unknown 32.4
1831 Male, age 72, unknown 30.6
Periaquaductal grey, lateral
nTPM: 29.4
2053 Male, age 18, unknown 30.1
2140 Male, age 76, both hemispheres 29.7
2272 Male, age 74, both hemispheres 28.5
Pretectal area
nTPM: 33.1
2825 Male, age 18, unknown 39.4
1816 Male, age 51, unknown 36.8
1815 Male, age 53, unknown 36.2
2007 Male, age 72, unknown 35.7
1817 Female, age 42, unknown 35.1
2224 Female, age 72, unknown 35.0
2667 Female, age 75, unknown 33.8
1944 Female, age 72, unknown 30.2
2273 Male, age 74, both hemispheres 28.5
2316 Male, age 76, right hemisphere 27.0
2407 Male, age 75, both hemispheres 26.4
Red nucleus
nTPM: 34.2
2503 Female, age 72, unknown 37.8
2588 Male, age 74, left hemisphere 37.6
1821 Female, age 72, unknown 36.7
2769 Male, age 72, unknown 35.3
2227 Male, age 72, unknown 35.0
1904 Male, age 53, unknown 34.5
2823 Male, age 76, right hemisphere 34.5
2785 Male, age 18, unknown 33.1
1865 Male, age 51, unknown 33.0
2725 Female, age 75, unknown 32.2
1954 Female, age 42, unknown 30.5
2584 Male, age 75, left hemisphere 30.1
Substantia nigra
nTPM: 33.4
2665 Male, age 74, both hemispheres 38.6
1941 Male, age 53, unknown 36.4
2699 Male, age 18, unknown 35.9
1916 Female, age 42, unknown 35.5
1851 Male, age 51, unknown 34.4
1889 Female, age 72, unknown 34.4
2583 Male, age 75, right hemisphere 33.0
2409 Female, age 72, unknown 29.7
2590 Female, age 75, unknown 29.3
2241 Male, age 72, unknown 27.2
Superior colliculus
nTPM: 33.1
2668 Female, age 75, unknown 37.1
2664 Male, age 75, both hemispheres 35.2
2587 Male, age 74, left hemisphere 34.2
1839 Male, age 51, unknown 34.0
1913 Female, age 42, unknown 33.8
1796 Male, age 53, unknown 33.4
2261 Male, age 18, unknown 32.2
2087 Female, age 72, unknown 31.7
1995 Male, age 72, unknown 30.0
1895 Male, age 76, right hemisphere 29.8
Ventral tegmental area
nTPM: 35.2
1915 Female, age 42, unknown 38.2
2223 Female, age 72, unknown 36.9
2218 Male, age 76, both hemispheres 35.6
2410 Female, age 72, unknown 35.4
1942 Male, age 51, unknown 34.4
2021 Male, age 53, unknown 31.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.5
Samples: 183

Max nTPM: 72.3
Min nTPM: 23.5
Std nTPM: 8.1
Median nTPM: 40.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 72.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 69.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 69.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 67.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 63.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 62.1
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 61.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 58.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 56.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 55.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 55.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 121.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.5
FF:10158-103A5 76 years, female 121.5

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