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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:73.5 nTPM
HPA Brain:38.2 nTPM
GTEx:73.5 nTPM
FANTOM5:101.5 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.2
Sample id Sample description nTPM
Amygdala
nTPM: 27.8
2695 Female, age 67, right hemisphere 29.5
2517 Female, age 94, left hemisphere 28.8
1987 Female, age 91, left hemisphere 28.3
2514 Male, age 75, right hemisphere 27.5
2814 Male, age 76, right hemisphere 24.6
Basal amygdala
nTPM: 34.1
2243 Female, age 91, right hemisphere 49.0
2110 Male, age 80, left hemisphere 34.7
2827 Female, age 67, right hemisphere 33.9
2685 Female, age 94, left hemisphere 31.7
1955 Male, age 76, both hemispheres 31.3
2609 Male, age 75, right hemisphere 23.9
Central amygdala
nTPM: 32.6
2239 Male, age 80, left hemisphere 45.5
2701 Female, age 91, right hemisphere 35.8
2826 Female, age 94, left hemisphere 31.0
2515 Male, age 75, right hemisphere 29.0
1905 Male, age 76, both hemispheres 21.8
Corticomedial amygdala
nTPM: 38.2
2242 Female, age 91, right hemisphere 51.6
2535 Female, age 67, right hemisphere 46.4
2240 Male, age 76, both hemispheres 44.3
2829 Male, age 80, left hemisphere 35.8
2429 Female, age 94, left hemisphere 31.3
2428 Male, age 75, right hemisphere 19.8
Lateral amygdala
nTPM: 29.8
2255 Female, age 91, right hemisphere 35.4
2256 Male, age 80, left hemisphere 33.1
2534 Female, age 94, left hemisphere 30.2
2516 Male, age 75, right hemisphere 28.0
2830 Female, age 67, right hemisphere 27.2
1883 Male, age 76, both hemispheres 24.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 73.5
Samples: 181

Max nTPM: 181.1
Min nTPM: 30.8
Std nTPM: 27.2
Median nTPM: 70.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 181.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 175.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 168.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 156.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 135.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 135.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 134.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 131.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 121.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 116.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 114.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 112.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 112.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 111.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 110.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 110.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 109.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 108.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 107.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 106.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 106.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 105.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 105.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 102.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 102.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 101.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 100.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 100.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 99.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 99.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 97.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 97.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 96.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 95.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 91.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 90.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 90.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 89.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 89.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 89.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 89.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 88.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 88.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 87.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 86.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 85.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 85.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 85.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 84.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 84.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 83.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 83.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 82.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 82.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 81.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 81.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 81.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 80.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 80.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 80.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 79.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 79.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 78.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 78.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 77.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 77.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 77.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 76.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 75.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 73.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 73.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 73.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 72.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 72.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 72.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 72.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 72.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 71.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 70.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 70.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 70.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 70.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 70.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 70.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 70.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 70.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 70.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 69.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 68.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 68.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 67.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 67.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 66.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 66.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 65.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 65.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 65.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 64.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 64.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 63.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 63.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 62.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 62.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 62.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 62.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 62.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 62.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 62.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 61.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 61.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 61.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 61.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 61.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 61.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 60.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 60.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 60.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 59.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 57.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 57.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 56.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 56.9
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 56.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 56.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 54.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 54.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 54.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 54.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 53.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 53.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 53.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 53.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 52.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 52.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 51.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 51.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 51.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 49.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 49.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 49.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 49.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 47.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 47.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 47.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 46.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 45.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 44.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 43.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 43.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 43.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 42.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 42.5
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 42.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 41.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 41.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 40.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 40.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 39.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 39.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 39.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 37.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 36.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 34.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 34.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 33.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 32.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 31.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 30.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

101.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 101.5
FF:10151-102I7 76 years, female 101.5

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