MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:167.4 nTPM
HPA Brain:10.9 nTPM
GTEx:167.4 nTPM
FANTOM5:582.4 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.4
2219 Male, age 76, both hemispheres 2.3
1830 Male, age 51, unknown 2.0
2666 Male, age 74, left hemisphere 2.0
2411 Female, age 72, unknown 1.5
2828 Female, age 72, unknown 1.5
1870 Female, age 42, unknown 1.4
2019 Male, age 18, unknown 1.4
2586 Male, age 75, left hemisphere 0.9
1833 Male, age 53, unknown 0.8
1827 Male, age 72, unknown 0.4
Dorsal raphe nucleus
nTPM: 1.4
2016 Female, age 72, unknown 2.1
2298 Female, age 72, unknown 1.7
2750 Male, age 76, both hemispheres 1.6
1828 Male, age 53, unknown 0.8
2047 Male, age 72, unknown 0.7
Inferior colliculus
nTPM: 1.1
1848 Female, age 42, unknown 1.5
2097 Female, age 72, unknown 1.5
1890 Male, age 53, unknown 0.9
2849 Male, age 72, unknown 0.7
Median raphe nucleus
nTPM: 1.8
2220 Male, age 76, midline 1.8
Periaquaductal grey, anterior
nTPM: 1.6
1795 Male, age 51, unknown 2.2
2502 Female, age 75, unknown 1.4
1947 Male, age 18, unknown 1.1
Periaquaductal grey, dorsal
nTPM: 2.3
1831 Male, age 72, unknown 4.6
2850 Male, age 76, both hemispheres 2.7
2464 Female, age 72, unknown 1.3
1840 Male, age 53, unknown 0.6
Periaquaductal grey, lateral
nTPM: 3.4
2272 Male, age 74, both hemispheres 4.6
2053 Male, age 18, unknown 3.3
2140 Male, age 76, both hemispheres 2.4
Pretectal area
nTPM: 1.7
2273 Male, age 74, both hemispheres 4.2
2316 Male, age 76, right hemisphere 3.4
2224 Female, age 72, unknown 1.7
1944 Female, age 72, unknown 1.6
2825 Male, age 18, unknown 1.5
1817 Female, age 42, unknown 1.4
2667 Female, age 75, unknown 1.4
2407 Male, age 75, both hemispheres 1.3
1815 Male, age 53, unknown 0.9
2007 Male, age 72, unknown 0.9
1816 Male, age 51, unknown 0.0
Red nucleus
nTPM: 1.4
1865 Male, age 51, unknown 3.3
1954 Female, age 42, unknown 1.9
2725 Female, age 75, unknown 1.9
1821 Female, age 72, unknown 1.4
2227 Male, age 72, unknown 1.3
2503 Female, age 72, unknown 1.3
2769 Male, age 72, unknown 1.3
2823 Male, age 76, right hemisphere 1.3
2785 Male, age 18, unknown 1.2
2584 Male, age 75, left hemisphere 0.9
1904 Male, age 53, unknown 0.8
2588 Male, age 74, left hemisphere 0.4
Substantia nigra
nTPM: 2.5
2699 Male, age 18, unknown 6.9
2665 Male, age 74, both hemispheres 4.5
1851 Male, age 51, unknown 3.0
2241 Male, age 72, unknown 2.5
1916 Female, age 42, unknown 1.7
1889 Female, age 72, unknown 1.4
2583 Male, age 75, right hemisphere 1.4
2590 Female, age 75, unknown 1.4
2409 Female, age 72, unknown 1.3
1941 Male, age 53, unknown 0.6
Superior colliculus
nTPM: 1.7
2587 Male, age 74, left hemisphere 4.3
1995 Male, age 72, unknown 3.4
1913 Female, age 42, unknown 1.7
2668 Female, age 75, unknown 1.7
2087 Female, age 72, unknown 1.6
1796 Male, age 53, unknown 1.4
1839 Male, age 51, unknown 1.3
2664 Male, age 75, both hemispheres 1.1
1895 Male, age 76, right hemisphere 0.7
2261 Male, age 18, unknown 0.2
Ventral tegmental area
nTPM: 10.9
2021 Male, age 53, unknown 55.8
1942 Male, age 51, unknown 2.6
2218 Male, age 76, both hemispheres 2.2
1915 Female, age 42, unknown 1.5
2223 Female, age 72, unknown 1.5
2410 Female, age 72, unknown 1.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 167.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 167.4
Samples: 183

Max nTPM: 812.9
Min nTPM: 6.9
Std nTPM: 135.3
Median nTPM: 132.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 812.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 740.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 669.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 548.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 495.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 458.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 429.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 419.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 417.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 380.8
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 377.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 582.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 582.4
FF:10158-103A5 76 years, female 582.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.4
Samples: 4

Max nTPM: 58.2
Min nTPM: 17.4
Sample A Female 21.2
Sample B Female 58.2
Sample C Male 17.4
Sample D Male 32.9
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 29.9
Min nTPM: 14.2
Sample A Female 29.9
Sample B Female 19.7
Sample C Male 16.2
Sample D Male 14.2
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 19.6
Min nTPM: 15.6
Sample B Female 18.5
Sample C Male 19.6
Sample D Male 15.6
Superior colliculi
nTPM: 24.7
Samples: 4

Max nTPM: 27.7
Min nTPM: 22.2
Sample A Female 22.2
Sample B Female 27.7
Sample C Male 23.3
Sample D Male 25.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71764812 Antisense, RP_050926_01_H04, Mouse strain C57BL/6J (56 days, male) 0.1

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