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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • HSPA1A
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:798.8 nTPM
HPA Brain:1.6 nTPM
GTEx:798.8 nTPM
FANTOM5:1290.1 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 0.9
2048 Male, age 55, midline 1.4
1981 Female, age 72, midline 1.0
2194 Female, age 79, both hemispheres 1.0
2816 Male, age 47, midline 1.0
2565 Male, age 75, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 1.6
2069 Male, age 47, both hemispheres 3.0
2296 Male, age 66, both hemispheres 2.3
1877 Male, age 55, unknown 2.0
2173 Female, age 72, unknown 1.0
2721 Male, age 90, both hemispheres 1.0
2297 Male, age 75, both hemispheres 0.5
Cervical spinal cord, ventral horn
nTPM: 0.9
2068 Male, age 55, unknown 1.1
2098 Female, age 72, unknown 1.0
2809 Male, age 90, both hemispheres 1.0
2820 Female, age 79, both hemispheres 1.0
2480 Male, age 75, both hemispheres 0.7
2295 Male, age 66, both hemispheres 0.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

798.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 798.8
Samples: 204

Max nTPM: 12324.2
Min nTPM: 37.1
Std nTPM: 1229.4
Median nTPM: 455.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 12324.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 6637.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 6095.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 4578.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 3928.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 3699.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 3305.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 3181.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 3009.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 2968.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 2715.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 2634.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2407.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 2189.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 2167.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 2141.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2128.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1909.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1851.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1745.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1739.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1683.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1673.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 1629.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1553.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1427.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1340.0
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 1334.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1308.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1307.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1218.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1040.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1033.5
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1029.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 991.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 929.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 928.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 913.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 910.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 907.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 902.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 893.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 877.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 877.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 875.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 853.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 849.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 849.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 840.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 832.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 819.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 811.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 782.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 771.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 769.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 767.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 749.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 731.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 707.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 694.0
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 693.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 693.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 693.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 688.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 674.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 672.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 657.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 643.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 641.9
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 639.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 624.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 616.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 611.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 598.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 583.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 568.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 559.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 555.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 544.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 540.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 535.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 534.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 533.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 529.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 526.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 515.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 506.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 506.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 505.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 498.6
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 486.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 484.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 477.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 471.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 470.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 470.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 469.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 468.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 466.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 460.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 460.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 459.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 452.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 451.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 449.9
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 448.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 447.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 446.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 443.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 439.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 431.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 429.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 427.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 422.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 417.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 413.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 406.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 398.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 398.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 397.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 394.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 388.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 386.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 380.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 379.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 368.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 366.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 365.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 362.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 362.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 350.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 346.9
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 337.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 330.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 329.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 328.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 322.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 315.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 307.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 306.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 306.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 301.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 290.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 287.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 286.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 284.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 277.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 276.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 273.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 269.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 269.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 268.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 267.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 267.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 262.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 262.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 257.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 251.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 249.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 246.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 245.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 243.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 233.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 231.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 229.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 228.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 214.1
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 204.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 202.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 200.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 197.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 197.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 195.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 195.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 192.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 191.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 173.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 172.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 168.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 164.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 162.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 157.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 140.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 136.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 133.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 132.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 132.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 130.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 126.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 123.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 119.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 118.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 117.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 111.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 108.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 103.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 91.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 82.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 78.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 64.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 53.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 49.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 48.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 37.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1290.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1290.1
FF:10159-103A6 76 years, female 1701.1
FF:10181-103D1 60 years, female 879.1

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