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RACK1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RACK1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:339.0 nTPM
FANTOM5:553.8 Scaled Tags Per Million
Pig:143.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB004288
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 339.0
Samples: 300

Max nTPM: 930.9
Min nTPM: 197.7
Std nTPM: 81.1
Median nTPM: 327.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 930.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 660.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 606.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 602.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 594.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 533.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 510.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 507.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 506.4
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 503.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 501.1
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 493.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 492.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 484.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 480.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 468.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 467.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 466.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 464.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 454.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 454.0
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 453.5
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 451.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 446.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 444.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 442.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 442.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 441.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 439.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 439.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 438.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 434.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 431.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 426.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 422.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 422.4
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 420.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 419.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 419.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 418.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 411.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 409.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 406.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 404.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 403.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 402.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 401.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 400.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 398.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 396.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 396.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 396.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 396.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 394.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 393.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 391.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 390.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 389.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 389.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 388.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 388.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 386.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 386.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 386.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 385.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 385.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 385.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 385.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 384.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 383.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 382.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 381.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 381.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 381.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 380.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 380.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 380.5
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 378.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 374.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 374.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 374.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 373.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 373.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 373.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 372.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 370.6
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 370.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 368.5
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 367.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 366.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 365.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 365.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 364.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 363.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 363.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 363.0
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 362.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 361.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 361.1
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 360.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 360.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 359.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 357.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 356.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 355.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 355.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 355.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 355.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 353.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 353.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 352.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 352.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 352.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 352.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 351.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 349.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 349.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 348.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 347.9
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 346.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 345.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 345.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 345.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 344.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 342.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 342.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 342.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 341.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 340.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 340.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 340.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 339.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 338.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 338.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 337.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 337.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 336.9
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 336.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 336.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 335.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 335.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 334.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 334.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 333.7
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 332.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 330.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 329.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 329.6
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 327.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 327.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 327.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 327.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 326.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 326.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 325.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 324.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 323.3
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 323.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 323.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 322.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 322.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 321.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 321.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 321.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 321.1
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 320.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 318.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 318.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 318.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 317.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 316.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 316.8
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 315.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 315.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 312.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 312.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 312.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 311.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 310.1
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 310.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 308.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 307.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 307.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 307.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 304.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 304.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 304.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 304.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 303.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 303.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 303.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 302.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 302.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 302.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 301.6
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 301.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 301.0
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 301.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 300.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 300.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 299.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 299.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 298.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 297.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 296.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 296.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 296.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 296.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 295.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 295.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 294.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 294.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 293.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 293.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 293.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 292.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 291.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 290.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 289.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 288.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 288.4
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 287.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 286.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 286.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 286.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 286.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 286.0
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 284.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 283.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 282.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 282.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 281.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 280.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 279.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 278.8
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 278.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 277.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 277.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 277.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 277.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 276.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 276.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 276.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 273.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 273.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 272.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 271.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 270.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 270.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 270.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 267.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 266.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 266.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 266.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 263.9
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 263.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 262.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 262.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 261.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 260.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 260.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 260.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 260.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 260.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 259.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 256.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 256.3
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 254.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 252.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 250.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 250.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 249.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 247.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 247.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 246.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 244.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 244.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 243.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 243.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 242.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 242.1
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 240.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 239.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 238.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 237.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 235.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 235.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 235.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 234.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 233.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 224.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 220.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 219.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 218.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 216.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 216.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 214.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 212.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 203.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 197.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

553.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 553.8
FF:10164-103B2 76 years, female 553.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.2
Pig sample Sample description nTPM
Caudate
nTPM: 143.2
Samples: 4

Max nTPM: 163.5
Min nTPM: 118.1
Sample A Female 135.8
Sample B Female 155.4
Sample C Male 163.5
Sample D Male 118.1

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