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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1091.4 nTPM
GTEx:1091.4 nTPM
FANTOM5:2086.9 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB004288
Squamous epithelial cells Medium

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1091.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1091.4
Samples: 170

Max nTPM: 2679.7
Min nTPM: 618.9
Std nTPM: 279.2
Median nTPM: 1066.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 2679.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 2122.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1798.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1772.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1713.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1636.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1586.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1514.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1504.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 1504.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1496.1
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1489.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1469.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1454.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1448.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1440.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1432.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1423.1
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1401.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1387.3
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1386.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1374.1
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1353.3
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1348.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1344.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1342.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1334.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1333.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1328.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1318.1
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1299.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1298.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1295.4
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1275.3
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1270.4
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1269.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1269.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1267.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1263.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1263.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1263.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1261.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1260.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1259.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1257.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1238.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1237.7
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1232.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1198.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1198.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1191.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1181.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1171.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1170.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1169.6
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1164.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1164.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1142.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1139.2
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1139.1
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1138.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1138.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1135.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1134.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1126.8
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1126.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1119.1
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1118.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1116.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1113.6
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1107.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1107.0
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1106.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1104.3
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1099.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1099.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1098.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1093.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1092.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1090.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1086.1
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1080.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1078.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1070.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1067.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1065.8
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1061.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1051.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1049.3
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1041.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1033.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1029.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1028.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1027.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1026.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1024.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1024.3
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1022.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1015.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1009.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1005.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 998.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 995.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 995.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 984.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 980.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 973.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 972.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 972.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 968.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 966.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 958.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 957.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 956.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 954.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 953.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 946.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 941.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 940.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 939.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 938.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 937.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 929.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 925.6
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 919.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 914.1
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 913.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 910.0
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 902.9
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 900.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 897.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 888.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 888.3
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 884.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 874.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 864.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 861.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 853.9
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 848.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 840.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 823.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 817.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 814.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 813.8
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 809.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 807.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 806.1
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 804.5
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 801.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 799.8
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 794.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 784.2
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 782.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 780.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 759.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 748.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 747.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 744.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 743.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 740.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 735.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 709.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 708.8
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 698.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 697.9
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 697.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 692.5
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 670.5
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 619.4
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 618.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2086.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 2086.9
FF:10204-103F6 68 years, female 2086.9

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