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  • TMEM88B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:46.8 nTPM
HPA Brain:89.5 nTPM
GTEx:46.8 nTPM
FANTOM5:39.0 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:18.9 nTPM
Allen mouse:4.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.5
Sample id Sample description nTPM
Amygdala
nTPM: 78.0
2814 Male, age 76, right hemisphere 113.8
2695 Female, age 67, right hemisphere 85.5
2514 Male, age 75, right hemisphere 67.7
2517 Female, age 94, left hemisphere 67.7
1987 Female, age 91, left hemisphere 55.5
Basal amygdala
nTPM: 62.1
2827 Female, age 67, right hemisphere 91.3
2685 Female, age 94, left hemisphere 75.5
2110 Male, age 80, left hemisphere 61.4
1955 Male, age 76, both hemispheres 59.7
2609 Male, age 75, right hemisphere 52.2
2243 Female, age 91, right hemisphere 32.4
Central amygdala
nTPM: 73.9
1905 Male, age 76, both hemispheres 92.2
2826 Female, age 94, left hemisphere 83.5
2701 Female, age 91, right hemisphere 73.9
2239 Male, age 80, left hemisphere 66.7
2515 Male, age 75, right hemisphere 53.1
Corticomedial amygdala
nTPM: 40.7
2535 Female, age 67, right hemisphere 54.0
2429 Female, age 94, left hemisphere 50.0
2428 Male, age 75, right hemisphere 48.9
2240 Male, age 76, both hemispheres 39.8
2829 Male, age 80, left hemisphere 33.1
2242 Female, age 91, right hemisphere 18.6
Lateral amygdala
nTPM: 89.5
2830 Female, age 67, right hemisphere 119.8
2256 Male, age 80, left hemisphere 90.9
2516 Male, age 75, right hemisphere 86.4
1883 Male, age 76, both hemispheres 81.6
2255 Female, age 91, right hemisphere 80.4
2534 Female, age 94, left hemisphere 77.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 46.8
Samples: 181

Max nTPM: 161.8
Min nTPM: 4.2
Std nTPM: 27.7
Median nTPM: 39.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 161.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 149.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 127.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 126.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 118.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 111.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 100.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 98.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 93.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 93.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 91.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 89.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 89.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 89.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 88.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 86.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 86.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 84.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 84.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 82.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 80.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 79.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 78.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 78.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 77.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 74.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 73.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 73.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 70.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 70.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 69.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 69.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 69.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 69.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 68.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 68.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 67.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 66.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 65.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 65.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 63.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 62.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 61.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 61.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 60.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 60.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 58.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 57.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 55.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 55.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 55.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 55.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 53.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 53.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 53.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 52.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 52.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 52.0
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 50.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 50.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 49.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 49.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 49.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 47.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 47.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 47.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 47.5
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 46.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 45.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 44.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 43.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 43.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 43.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 42.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 42.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 42.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 41.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 40.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 40.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 39.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 39.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 39.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 39.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 39.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 38.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 38.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 37.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 37.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 37.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 37.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 37.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 36.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 36.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 36.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 36.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 36.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 35.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 34.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 34.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 33.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 33.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 33.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 33.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 33.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 32.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 32.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 32.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 31.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 31.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 31.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 30.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 29.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 29.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 28.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 28.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 28.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 28.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 28.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 28.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 28.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 28.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 27.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 27.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 27.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 27.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 26.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 26.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 26.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 26.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 26.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 26.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 26.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 25.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 25.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 24.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 24.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 24.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 23.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 22.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 22.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 21.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 21.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 20.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 20.2
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 20.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 20.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 19.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 19.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 18.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 18.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 17.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 17.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 17.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 17.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 17.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 16.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 16.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 15.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 15.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 14.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 14.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 13.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 12.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 12.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 11.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 11.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 10.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 10.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 9.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 8.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 4.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

39.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 39.0
FF:10151-102I7 76 years, female 39.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.3
Pig sample Sample description nTPM
Amygdala
nTPM: 22.3
Samples: 4

Max nTPM: 33.3
Min nTPM: 13.6
Sample A Female 17.1
Sample B Female 33.3
Sample C Male 25.1
Sample D Male 13.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 18.9
Samples: 4

Max nTPM: 29.4
Min nTPM: 14.4
Sample A Male 16.4
Sample B Male 14.4
Sample C Female 29.4
Sample D Female 15.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.4
69447978 Antisense, RP_050419_02_D12, Mouse strain C57BL/6J (56 days, male) 4.4

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