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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:191.0 nTPM
HPA Brain:88.8 nTPM
GTEx:191.0 nTPM
FANTOM5:353.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

88.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 74.0
2048 Male, age 55, midline 101.5
1981 Female, age 72, midline 96.9
2565 Male, age 75, midline 82.1
2816 Male, age 47, midline 45.2
2194 Female, age 79, both hemispheres 44.5
Cervical spinal cord, dorsal horn
nTPM: 69.6
2173 Female, age 72, unknown 102.9
2069 Male, age 47, both hemispheres 74.4
1877 Male, age 55, unknown 74.1
2721 Male, age 90, both hemispheres 64.4
2297 Male, age 75, both hemispheres 60.7
2296 Male, age 66, both hemispheres 41.0
Cervical spinal cord, ventral horn
nTPM: 88.8
2480 Male, age 75, both hemispheres 125.1
2098 Female, age 72, unknown 115.5
2809 Male, age 90, both hemispheres 103.0
2295 Male, age 66, both hemispheres 92.1
2068 Male, age 55, unknown 57.6
2820 Female, age 79, both hemispheres 39.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 191.0
Samples: 204

Max nTPM: 1091.8
Min nTPM: 32.0
Std nTPM: 177.6
Median nTPM: 127.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 1091.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 901.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 894.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 848.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 740.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 725.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 698.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 687.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 659.5
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 597.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 570.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 537.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 486.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 474.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 470.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 460.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 457.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 430.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 425.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 416.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 413.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 402.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 399.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 389.7
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 379.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 379.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 376.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 367.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 359.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 353.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 335.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 330.9
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 330.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 298.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 288.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 280.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 279.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 275.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 273.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 272.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 258.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 258.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 257.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 257.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 250.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 249.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 246.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 243.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 242.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 241.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 238.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 236.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 234.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 232.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 232.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 227.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 221.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 212.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 211.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 211.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 206.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 206.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 199.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 199.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 190.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 189.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 186.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 183.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 177.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 176.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 176.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 172.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 170.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 169.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 168.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 166.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 162.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 159.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 158.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 158.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 156.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 149.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 149.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 148.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 146.7
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 143.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 140.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 140.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 139.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 138.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 138.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 137.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 137.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 135.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 130.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 129.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 129.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 129.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 128.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 128.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 128.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 127.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 127.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 127.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 127.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 125.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 125.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 122.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 120.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 120.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 119.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 117.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 116.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 116.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 114.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 114.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 112.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 111.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 109.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 107.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 104.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 103.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 103.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 103.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 99.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 98.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 97.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 97.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 95.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 94.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 94.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 93.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 93.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 93.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 92.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 91.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 90.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 88.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 88.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 88.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 88.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 88.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 87.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 87.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 86.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 82.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 81.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 80.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 75.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 74.8
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 74.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 74.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 74.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 74.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 73.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 73.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 72.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 72.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 72.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 72.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 72.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 71.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 71.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 71.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 70.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 70.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 70.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 69.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 69.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 68.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 68.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 68.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 67.8
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 67.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 67.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 65.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 64.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 63.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 62.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 61.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 61.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 61.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 60.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 60.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 59.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 57.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 56.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 55.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 55.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 55.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 54.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 54.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 52.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 49.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 47.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 47.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 45.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 44.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 43.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 43.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 42.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 41.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 32.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

353.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 353.4
FF:10181-103D1 60 years, female 491.0
FF:10159-103A6 76 years, female 215.8

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