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  • SMIM11
TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:11.1 nTPM
GTEx:11.1 nTPM

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA051321
Squamous epithelial cells Not detected

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 11.1
Samples: 170

Max nTPM: 21.2
Min nTPM: 4.2
Std nTPM: 3.4
Median nTPM: 10.9
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 21.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 20.5
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 20.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 20.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 19.5
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 18.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 18.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 18.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 17.8
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 17.6
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 16.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 16.4
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 16.4
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 16.3
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 16.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 15.9
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 15.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 15.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 15.8
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 15.5
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 15.4
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 15.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 15.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 14.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 14.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 14.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 14.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 14.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 14.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 14.2
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 14.2
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 14.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 14.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 13.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 13.7
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 13.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 13.5
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 13.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 13.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 13.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 13.0
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 12.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 12.9
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 12.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 12.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 12.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 12.7
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 12.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 12.4
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 12.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 12.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 12.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 12.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 12.2
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 12.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 12.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 12.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 12.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 12.0
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 12.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 12.0
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 11.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 11.9
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 11.9
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 11.8
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 11.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 11.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 11.6
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 11.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 11.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 11.5
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 11.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 11.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 11.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 11.3
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 11.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 11.2
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 11.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 11.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 11.0
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 11.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 11.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 11.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 10.9
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 10.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 10.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 10.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 10.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 10.8
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 10.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 10.7
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 10.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 10.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 10.5
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 10.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 10.3
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 10.3
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 10.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 10.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 10.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 10.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 10.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 10.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 10.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 9.9
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 9.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 9.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 9.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 9.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 9.7
GTEX-14PKU-1326-SM-6871B 40-49 years, female 9.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 9.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 9.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 9.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 9.6
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 9.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 9.4
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 9.3
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 9.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 9.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 9.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 9.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 8.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 8.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 8.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 8.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 8.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 8.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 8.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 8.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 8.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 8.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 8.3
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 8.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 8.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 8.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 8.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 7.9
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 7.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 7.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 7.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 7.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 7.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 7.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 7.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 7.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 7.5
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 7.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 7.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 7.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 7.4
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 7.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 7.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 7.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 7.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 7.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 7.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 6.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 6.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 6.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 6.5
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 6.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 6.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 5.8
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 5.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 5.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 5.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 5.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 4.8
GTEX-1C475-0526-SM-793AC 40-49 years, female 4.2
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